Gene : Seita.2G382800 S. italica v2.2
Defline:  (1 of 1) PTHR33417:SF1 - B12D PROTEIN Genomic Order:  3828
Name:  ? Seita.2G382800 Secondary Identifier:  ? PAC:32721058
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G382800 0.5kb upstream 0.5kb upstream 1340 true scaffold_2: 45235565-45236904 Setaria italica
Seita.2G382800 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 45235565-45236064 Setaria italica
Seita.2G382800 0.5kb downstream 0.5kb downstream 1340 true scaffold_2: 45236065-45237404 Setaria italica
Seita.2G382800 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 45236905-45237404 Setaria italica
Seita.2G382800 1.0kb upstream 1.0kb upstream 1840 true scaffold_2: 45235065-45236904 Setaria italica
Seita.2G382800 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 45235065-45236064 Setaria italica
Seita.2G382800 1.0kb downstream 1.0kb downstream 1840 true scaffold_2: 45236065-45237904 Setaria italica
Seita.2G382800 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 45236905-45237904 Setaria italica
Seita.2G382800 2.0kb upstream 2.0kb upstream 2840 true scaffold_2: 45234065-45236904 Setaria italica
Seita.2G382800 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 45234065-45236064 Setaria italica
Seita.2G382800 2.0kb downstream 2.0kb downstream 2840 true scaffold_2: 45236065-45238904 Setaria italica
Seita.2G382800 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 45236905-45238904 Setaria italica
Seita.2G382800 5.0kb upstream 5.0kb upstream 5840 true scaffold_2: 45231065-45236904 Setaria italica
Seita.2G382800 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 45231065-45236064 Setaria italica
Seita.2G382800 5.0kb downstream 5.0kb downstream 5840 true scaffold_2: 45236065-45241904 Setaria italica
Seita.2G382800 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 45236905-45241904 Setaria italica
Seita.2G382800 10.0kb upstream 10.0kb upstream 10840 true scaffold_2: 45226065-45236904 Setaria italica
Seita.2G382800 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 45226065-45236064 Setaria italica
Seita.2G382800 10.0kb downstream 10.0kb downstream 10840 true scaffold_2: 45236065-45246904 Setaria italica
Seita.2G382800 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 45236905-45246904 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179730 5267 Panicoideae View MSA
124582798 5269 Grass View MSA
122048114 5273 Angiosperm View MSA
121310851 5274 Embryophyte View MSA
123348236 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.776        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.022     Low Low
cufflinks 0.061     Low  
cufflinks 0.044     Low  
cufflinks 0.02     Low Low
cufflinks 0.027     Low  
cufflinks 0.051     Low  
cufflinks 0.019     Low Low
cufflinks 1.076        
cufflinks 0.098     Low  
cufflinks 35.896     High High
cufflinks 0.08     Low  
cufflinks 0.342        
cufflinks 0.834        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.831       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.101        
cufflinks 0.647        

0 Strain