Gene : Seita.2G384500 S. italica v2.2
Defline:  (1 of 12) PF05641 - Agenet domain (Agenet) Genomic Order:  3845
Name:  ? Seita.2G384500 Secondary Identifier:  ? PAC:32720163
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G384500 0.5kb upstream 0.5kb upstream 5011 true scaffold_2: 45342661-45347671 Setaria italica
Seita.2G384500 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 45347172-45347671 Setaria italica
Seita.2G384500 0.5kb downstream 0.5kb downstream 5011 true scaffold_2: 45342161-45347171 Setaria italica
Seita.2G384500 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 45342161-45342660 Setaria italica
Seita.2G384500 1.0kb upstream 1.0kb upstream 5511 true scaffold_2: 45342661-45348171 Setaria italica
Seita.2G384500 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 45347172-45348171 Setaria italica
Seita.2G384500 1.0kb downstream 1.0kb downstream 5511 true scaffold_2: 45341661-45347171 Setaria italica
Seita.2G384500 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 45341661-45342660 Setaria italica
Seita.2G384500 2.0kb upstream 2.0kb upstream 6511 true scaffold_2: 45342661-45349171 Setaria italica
Seita.2G384500 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 45347172-45349171 Setaria italica
Seita.2G384500 2.0kb downstream 2.0kb downstream 6511 true scaffold_2: 45340661-45347171 Setaria italica
Seita.2G384500 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 45340661-45342660 Setaria italica
Seita.2G384500 5.0kb upstream 5.0kb upstream 9511 true scaffold_2: 45342661-45352171 Setaria italica
Seita.2G384500 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 45347172-45352171 Setaria italica
Seita.2G384500 5.0kb downstream 5.0kb downstream 9511 true scaffold_2: 45337661-45347171 Setaria italica
Seita.2G384500 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 45337661-45342660 Setaria italica
Seita.2G384500 10.0kb upstream 10.0kb upstream 14511 true scaffold_2: 45342661-45357171 Setaria italica
Seita.2G384500 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 45347172-45357171 Setaria italica
Seita.2G384500 10.0kb downstream 10.0kb downstream 14511 true scaffold_2: 45332661-45347171 Setaria italica
Seita.2G384500 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 45332661-45342660 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179720 5267 Panicoideae View MSA
124572072 5269 Grass View MSA
122047439 5273 Angiosperm View MSA
121349027 5274 Embryophyte View MSA
123381130 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.697        
cufflinks 13.181     High High
cufflinks 10.37        
cufflinks 8.819        
cufflinks 7.306       Low
cufflinks 12.455        
cufflinks 9.357        
cufflinks 8.073       Low
cufflinks 6.564       Low
cufflinks 7.51       Low
cufflinks 8.4        
cufflinks 12.927       High
cufflinks 10.748        
cufflinks 10.929        
cufflinks 12.473        
cufflinks 12.106     High  
cufflinks 11.784        
cufflinks 14.42     High High
cufflinks 9.707        
cufflinks 10.617        

0 Strain