Gene : Seita.2G386000 S. italica v2.2
Defline:  (1 of 4) 3.1.3.24 - Sucrose-phosphate phosphatase / Sucrose-6-phosphate phosphatase Genomic Order:  3860
Name:  ? Seita.2G386000 Secondary Identifier:  ? PAC:32722768
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7238 Setaria italica pathologic  
Sitalica SUCSYN-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G386000 0.5kb upstream 0.5kb upstream 4983 true scaffold_2: 45440186-45445168 Setaria italica
Seita.2G386000 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 45440186-45440685 Setaria italica
Seita.2G386000 0.5kb downstream 0.5kb downstream 4983 true scaffold_2: 45440686-45445668 Setaria italica
Seita.2G386000 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 45445169-45445668 Setaria italica
Seita.2G386000 1.0kb upstream 1.0kb upstream 5483 true scaffold_2: 45439686-45445168 Setaria italica
Seita.2G386000 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 45439686-45440685 Setaria italica
Seita.2G386000 1.0kb downstream 1.0kb downstream 5483 true scaffold_2: 45440686-45446168 Setaria italica
Seita.2G386000 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 45445169-45446168 Setaria italica
Seita.2G386000 2.0kb upstream 2.0kb upstream 6483 true scaffold_2: 45438686-45445168 Setaria italica
Seita.2G386000 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 45438686-45440685 Setaria italica
Seita.2G386000 2.0kb downstream 2.0kb downstream 6483 true scaffold_2: 45440686-45447168 Setaria italica
Seita.2G386000 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 45445169-45447168 Setaria italica
Seita.2G386000 5.0kb upstream 5.0kb upstream 9483 true scaffold_2: 45435686-45445168 Setaria italica
Seita.2G386000 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 45435686-45440685 Setaria italica
Seita.2G386000 5.0kb downstream 5.0kb downstream 9483 true scaffold_2: 45440686-45450168 Setaria italica
Seita.2G386000 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 45445169-45450168 Setaria italica
Seita.2G386000 10.0kb upstream 10.0kb upstream 14483 true scaffold_2: 45430686-45445168 Setaria italica
Seita.2G386000 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 45430686-45440685 Setaria italica
Seita.2G386000 10.0kb downstream 10.0kb downstream 14483 true scaffold_2: 45440686-45455168 Setaria italica
Seita.2G386000 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 45445169-45455168 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193001 5267 Panicoideae View MSA
124591146 5269 Grass View MSA
122041652 5273 Angiosperm View MSA
123428930 5275 Viridiplantae View MSA
121349182 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.939        
cufflinks 7.827        
cufflinks 8.509        
cufflinks 11.539     High  
cufflinks 14.206     High High
cufflinks 6.851        
cufflinks 10.205        
cufflinks 11.428        
cufflinks 12.587     High High
cufflinks 2.966       Low
cufflinks 4.137        
cufflinks 4.031        
cufflinks 5.644        
cufflinks 7.81        
cufflinks 3.048       Low
cufflinks 13.771     High High
cufflinks 2.895       Low
cufflinks 3.644       Low
cufflinks 12.343     High High
cufflinks 4.683        

0 Strain