Gene : Seita.2G386500 S. italica v2.2
Defline:  (1 of 1) PTHR23350 - PEROXISOME ASSEMBLY PROTEIN 10 Genomic Order:  3865
Name:  ? Seita.2G386500 Secondary Identifier:  ? PAC:32722980
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G386500 0.5kb upstream 0.5kb upstream 5137 true scaffold_2: 45464150-45469286 Setaria italica
Seita.2G386500 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 45468787-45469286 Setaria italica
Seita.2G386500 0.5kb downstream 0.5kb downstream 5137 true scaffold_2: 45463650-45468786 Setaria italica
Seita.2G386500 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 45463650-45464149 Setaria italica
Seita.2G386500 1.0kb upstream 1.0kb upstream 5637 true scaffold_2: 45464150-45469786 Setaria italica
Seita.2G386500 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 45468787-45469786 Setaria italica
Seita.2G386500 1.0kb downstream 1.0kb downstream 5637 true scaffold_2: 45463150-45468786 Setaria italica
Seita.2G386500 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 45463150-45464149 Setaria italica
Seita.2G386500 2.0kb upstream 2.0kb upstream 6637 true scaffold_2: 45464150-45470786 Setaria italica
Seita.2G386500 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 45468787-45470786 Setaria italica
Seita.2G386500 2.0kb downstream 2.0kb downstream 6637 true scaffold_2: 45462150-45468786 Setaria italica
Seita.2G386500 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 45462150-45464149 Setaria italica
Seita.2G386500 5.0kb upstream 5.0kb upstream 9637 true scaffold_2: 45464150-45473786 Setaria italica
Seita.2G386500 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 45468787-45473786 Setaria italica
Seita.2G386500 5.0kb downstream 5.0kb downstream 9637 true scaffold_2: 45459150-45468786 Setaria italica
Seita.2G386500 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 45459150-45464149 Setaria italica
Seita.2G386500 10.0kb upstream 10.0kb upstream 14637 true scaffold_2: 45464150-45478786 Setaria italica
Seita.2G386500 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 45468787-45478786 Setaria italica
Seita.2G386500 10.0kb downstream 10.0kb downstream 14637 true scaffold_2: 45454150-45468786 Setaria italica
Seita.2G386500 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 45454150-45464149 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184852 5267 Panicoideae View MSA
124576185 5269 Grass View MSA
122041826 5273 Angiosperm View MSA
121346227 5274 Embryophyte View MSA
123427898 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.551        
cufflinks 2.72        
cufflinks 3.152        
cufflinks 3.085        
cufflinks 2.478       Low
cufflinks 2.817        
cufflinks 2.582       Low
cufflinks 3.671       High
cufflinks 2.817        
cufflinks 2.062       Low
cufflinks 2.733        
cufflinks 3.726       High
cufflinks 3.427        
cufflinks 3.255        
cufflinks 3.451        
cufflinks 3.214        
cufflinks 3.303        
cufflinks 3.335        
cufflinks 3.295        
cufflinks 3.342        

0 Strain