Gene : Seita.2G390500 S. italica v2.2
Defline:  (1 of 3) 2.6.1.83 - LL-diaminopimelate aminotransferase / LL-diaminopimelate transaminase Genomic Order:  3905
Name:  ? Seita.2G390500 Secondary Identifier:  ? PAC:32722953
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5097 Setaria italica pathologic  
Sitalica PWY-724 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G390500 0.5kb upstream 0.5kb upstream 4226 true scaffold_2: 45703054-45707279 Setaria italica
Seita.2G390500 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 45706780-45707279 Setaria italica
Seita.2G390500 0.5kb downstream 0.5kb downstream 4226 true scaffold_2: 45702554-45706779 Setaria italica
Seita.2G390500 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 45702554-45703053 Setaria italica
Seita.2G390500 1.0kb upstream 1.0kb upstream 4726 true scaffold_2: 45703054-45707779 Setaria italica
Seita.2G390500 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 45706780-45707779 Setaria italica
Seita.2G390500 1.0kb downstream 1.0kb downstream 4726 true scaffold_2: 45702054-45706779 Setaria italica
Seita.2G390500 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 45702054-45703053 Setaria italica
Seita.2G390500 2.0kb upstream 2.0kb upstream 5726 true scaffold_2: 45703054-45708779 Setaria italica
Seita.2G390500 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 45706780-45708779 Setaria italica
Seita.2G390500 2.0kb downstream 2.0kb downstream 5726 true scaffold_2: 45701054-45706779 Setaria italica
Seita.2G390500 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 45701054-45703053 Setaria italica
Seita.2G390500 5.0kb upstream 5.0kb upstream 8726 true scaffold_2: 45703054-45711779 Setaria italica
Seita.2G390500 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 45706780-45711779 Setaria italica
Seita.2G390500 5.0kb downstream 5.0kb downstream 8726 true scaffold_2: 45698054-45706779 Setaria italica
Seita.2G390500 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 45698054-45703053 Setaria italica
Seita.2G390500 10.0kb upstream 10.0kb upstream 13726 true scaffold_2: 45703054-45716779 Setaria italica
Seita.2G390500 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 45706780-45716779 Setaria italica
Seita.2G390500 10.0kb downstream 10.0kb downstream 13726 true scaffold_2: 45693054-45706779 Setaria italica
Seita.2G390500 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 45693054-45703053 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122064518 5267 Panicoideae View MSA
124590449 5269 Grass View MSA
122045161 5273 Angiosperm View MSA
121344343 5274 Embryophyte View MSA
123424947 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.571     High  
cufflinks 25.872     High  
cufflinks 19.08     High  
cufflinks 11.197     High Low
cufflinks 18.799     High  
cufflinks 21.257     High  
cufflinks 21.668     High  
cufflinks 29.649     High High
cufflinks 40.09     High High
cufflinks 16.549     High  
cufflinks 18.759     High  
cufflinks 16.582     High  
cufflinks 12.203       Low
cufflinks 25.208     High  
cufflinks 20.56     High  
cufflinks 13.41     High  
cufflinks 21.834     High  
cufflinks 9.293       Low
cufflinks 12.931     High Low
cufflinks 23.754     High  

0 Strain