Gene : Seita.2G394100 S. italica v2.2
Defline:  (1 of 1) PTHR18934//PTHR18934:SF81 - ATP-DEPENDENT RNA HELICASE Genomic Order:  3941
Name:  ? Seita.2G394100 Secondary Identifier:  ? PAC:32718049
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G394100 0.5kb upstream 0.5kb upstream 8463 true scaffold_2: 45920065-45928527 Setaria italica
Seita.2G394100 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 45928028-45928527 Setaria italica
Seita.2G394100 0.5kb downstream 0.5kb downstream 8463 true scaffold_2: 45919565-45928027 Setaria italica
Seita.2G394100 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 45919565-45920064 Setaria italica
Seita.2G394100 1.0kb upstream 1.0kb upstream 8963 true scaffold_2: 45920065-45929027 Setaria italica
Seita.2G394100 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 45928028-45929027 Setaria italica
Seita.2G394100 1.0kb downstream 1.0kb downstream 8963 true scaffold_2: 45919065-45928027 Setaria italica
Seita.2G394100 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 45919065-45920064 Setaria italica
Seita.2G394100 2.0kb upstream 2.0kb upstream 9963 true scaffold_2: 45920065-45930027 Setaria italica
Seita.2G394100 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 45928028-45930027 Setaria italica
Seita.2G394100 2.0kb downstream 2.0kb downstream 9963 true scaffold_2: 45918065-45928027 Setaria italica
Seita.2G394100 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 45918065-45920064 Setaria italica
Seita.2G394100 5.0kb upstream 5.0kb upstream 12963 true scaffold_2: 45920065-45933027 Setaria italica
Seita.2G394100 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 45928028-45933027 Setaria italica
Seita.2G394100 5.0kb downstream 5.0kb downstream 12963 true scaffold_2: 45915065-45928027 Setaria italica
Seita.2G394100 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 45915065-45920064 Setaria italica
Seita.2G394100 10.0kb upstream 10.0kb upstream 17963 true scaffold_2: 45920065-45938027 Setaria italica
Seita.2G394100 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 45928028-45938027 Setaria italica
Seita.2G394100 10.0kb downstream 10.0kb downstream 17963 true scaffold_2: 45910065-45928027 Setaria italica
Seita.2G394100 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 45910065-45920064 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189363 5267 Panicoideae View MSA
124582577 5269 Grass View MSA
122041869 5273 Angiosperm View MSA
121309896 5274 Embryophyte View MSA
123347530 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.924        
cufflinks 5.359       High
cufflinks 0.735        
cufflinks 0.245       Low
cufflinks 0.652        
cufflinks 4.873       High
cufflinks 1.455        
cufflinks 0.511       Low
cufflinks 0.859        
cufflinks 1.363        
cufflinks 1.907        
cufflinks 1.383        
cufflinks 1.471        
cufflinks 1.264        
cufflinks 2.353        
cufflinks 1.384        
cufflinks 1.419        
cufflinks 1.166        
cufflinks 0.259       Low
cufflinks 1.925        

0 Strain