Gene : Seita.2G320900 S. italica v2.2
Defline:  (1 of 1) PTHR10799//PTHR10799:SF625 - SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED Genomic Order:  3209
Name:  ? Seita.2G320900 Secondary Identifier:  ? PAC:32718541
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G320900 0.5kb upstream 0.5kb upstream 14166 true scaffold_2: 40993446-41007611 Setaria italica
Seita.2G320900 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 40993446-40993945 Setaria italica
Seita.2G320900 0.5kb downstream 0.5kb downstream 14166 true scaffold_2: 40993946-41008111 Setaria italica
Seita.2G320900 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 41007612-41008111 Setaria italica
Seita.2G320900 1.0kb upstream 1.0kb upstream 14666 true scaffold_2: 40992946-41007611 Setaria italica
Seita.2G320900 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 40992946-40993945 Setaria italica
Seita.2G320900 1.0kb downstream 1.0kb downstream 14666 true scaffold_2: 40993946-41008611 Setaria italica
Seita.2G320900 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 41007612-41008611 Setaria italica
Seita.2G320900 2.0kb upstream 2.0kb upstream 15666 true scaffold_2: 40991946-41007611 Setaria italica
Seita.2G320900 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 40991946-40993945 Setaria italica
Seita.2G320900 2.0kb downstream 2.0kb downstream 15666 true scaffold_2: 40993946-41009611 Setaria italica
Seita.2G320900 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 41007612-41009611 Setaria italica
Seita.2G320900 5.0kb upstream 5.0kb upstream 18666 true scaffold_2: 40988946-41007611 Setaria italica
Seita.2G320900 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 40988946-40993945 Setaria italica
Seita.2G320900 5.0kb downstream 5.0kb downstream 18666 true scaffold_2: 40993946-41012611 Setaria italica
Seita.2G320900 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 41007612-41012611 Setaria italica
Seita.2G320900 10.0kb upstream 10.0kb upstream 23666 true scaffold_2: 40983946-41007611 Setaria italica
Seita.2G320900 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 40983946-40993945 Setaria italica
Seita.2G320900 10.0kb downstream 10.0kb downstream 23666 true scaffold_2: 40993946-41017611 Setaria italica
Seita.2G320900 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 41007612-41017611 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191355 5267 Panicoideae View MSA
124582511 5269 Grass View MSA
122042077 5273 Angiosperm View MSA
121346690 5274 Embryophyte View MSA
123428510 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.581     High  
cufflinks 19.546     High High
cufflinks 16.053     High  
cufflinks 11.545     High  
cufflinks 10.419        
cufflinks 20.262     High High
cufflinks 16.567     High  
cufflinks 8.564       Low
cufflinks 10.486        
cufflinks 8.187       Low
cufflinks 15.645     High  
cufflinks 10.718        
cufflinks 12.787        
cufflinks 13.919     High  
cufflinks 17.364     High High
cufflinks 16.258     High  
cufflinks 9.736       Low
cufflinks 13.945     High  
cufflinks 12.048     High  
cufflinks 11.954        

0 Strain