Gene : Seita.2G325500 S. italica v2.2
Defline:  (1 of 2) PTHR31580:SF5 - FILAMENT-LIKE PLANT PROTEIN 3 Genomic Order:  3255
Name:  ? Seita.2G325500 Secondary Identifier:  ? PAC:32719599
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G325500 0.5kb upstream 0.5kb upstream 6045 true scaffold_2: 41310294-41316338 Setaria italica
Seita.2G325500 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 41310294-41310793 Setaria italica
Seita.2G325500 0.5kb downstream 0.5kb downstream 6045 true scaffold_2: 41310794-41316838 Setaria italica
Seita.2G325500 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 41316339-41316838 Setaria italica
Seita.2G325500 1.0kb upstream 1.0kb upstream 6545 true scaffold_2: 41309794-41316338 Setaria italica
Seita.2G325500 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 41309794-41310793 Setaria italica
Seita.2G325500 1.0kb downstream 1.0kb downstream 6545 true scaffold_2: 41310794-41317338 Setaria italica
Seita.2G325500 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 41316339-41317338 Setaria italica
Seita.2G325500 2.0kb upstream 2.0kb upstream 7545 true scaffold_2: 41308794-41316338 Setaria italica
Seita.2G325500 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 41308794-41310793 Setaria italica
Seita.2G325500 2.0kb downstream 2.0kb downstream 7545 true scaffold_2: 41310794-41318338 Setaria italica
Seita.2G325500 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 41316339-41318338 Setaria italica
Seita.2G325500 5.0kb upstream 5.0kb upstream 10545 true scaffold_2: 41305794-41316338 Setaria italica
Seita.2G325500 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 41305794-41310793 Setaria italica
Seita.2G325500 5.0kb downstream 5.0kb downstream 10545 true scaffold_2: 41310794-41321338 Setaria italica
Seita.2G325500 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 41316339-41321338 Setaria italica
Seita.2G325500 10.0kb upstream 10.0kb upstream 15545 true scaffold_2: 41300794-41316338 Setaria italica
Seita.2G325500 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 41300794-41310793 Setaria italica
Seita.2G325500 10.0kb downstream 10.0kb downstream 15545 true scaffold_2: 41310794-41326338 Setaria italica
Seita.2G325500 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 41316339-41326338 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183068 5267 Panicoideae View MSA
124589908 5269 Grass View MSA
122043487 5273 Angiosperm View MSA
121310135 5274 Embryophyte View MSA
123347707 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.719        
cufflinks 7.976        
cufflinks 6.092        
cufflinks 9.686       High
cufflinks 7.005        
cufflinks 8.329       High
cufflinks 6.184        
cufflinks 3.971        
cufflinks 1.823       Low
cufflinks 2.611        
cufflinks 5.162        
cufflinks 2.966        
cufflinks 6.929        
cufflinks 2.908        
cufflinks 7.44        
cufflinks 2.172       Low
cufflinks 4.118        
cufflinks 1.105       Low
cufflinks 8.548       High
cufflinks 5.261        

0 Strain