Gene : Seita.2G330800 S. italica v2.2
Defline:  (1 of 3) 4.2.1.3 - Aconitate hydratase / Citrate(isocitrate) hydro-lyase Genomic Order:  3308
Name:  ? Seita.2G330800 Secondary Identifier:  ? PAC:32721595
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica GLYOXYLATE-BYPASS Setaria italica pathologic  
Sitalica PWY-5464 Setaria italica pathologic  
Sitalica PWY-561 Setaria italica pathologic  
Sitalica PWY-5690 Setaria italica pathologic  
Sitalica PWY-6549 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G330800 0.5kb upstream 0.5kb upstream 7362 true scaffold_2: 41718663-41726024 Setaria italica
Seita.2G330800 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 41718663-41719162 Setaria italica
Seita.2G330800 0.5kb downstream 0.5kb downstream 7362 true scaffold_2: 41719163-41726524 Setaria italica
Seita.2G330800 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 41726025-41726524 Setaria italica
Seita.2G330800 1.0kb upstream 1.0kb upstream 7862 true scaffold_2: 41718163-41726024 Setaria italica
Seita.2G330800 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 41718163-41719162 Setaria italica
Seita.2G330800 1.0kb downstream 1.0kb downstream 7862 true scaffold_2: 41719163-41727024 Setaria italica
Seita.2G330800 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 41726025-41727024 Setaria italica
Seita.2G330800 2.0kb upstream 2.0kb upstream 8862 true scaffold_2: 41717163-41726024 Setaria italica
Seita.2G330800 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 41717163-41719162 Setaria italica
Seita.2G330800 2.0kb downstream 2.0kb downstream 8862 true scaffold_2: 41719163-41728024 Setaria italica
Seita.2G330800 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 41726025-41728024 Setaria italica
Seita.2G330800 5.0kb upstream 5.0kb upstream 11862 true scaffold_2: 41714163-41726024 Setaria italica
Seita.2G330800 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 41714163-41719162 Setaria italica
Seita.2G330800 5.0kb downstream 5.0kb downstream 11862 true scaffold_2: 41719163-41731024 Setaria italica
Seita.2G330800 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 41726025-41731024 Setaria italica
Seita.2G330800 10.0kb upstream 10.0kb upstream 16862 true scaffold_2: 41709163-41726024 Setaria italica
Seita.2G330800 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 41709163-41719162 Setaria italica
Seita.2G330800 10.0kb downstream 10.0kb downstream 16862 true scaffold_2: 41719163-41736024 Setaria italica
Seita.2G330800 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 41726025-41736024 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029305 5273 Angiosperm View MSA
122118309 5267 Panicoideae View MSA
124412114 5269 Grass View MSA
121298650 5274 Embryophyte View MSA
123428745 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.965       High
cufflinks 0.114     Low  
cufflinks 0.043     Low  
cufflinks 0.037     Low  
cufflinks 0.075     Low  
cufflinks 0.105     Low  
cufflinks 0.811       High
cufflinks 0.224        
cufflinks 0.241        
cufflinks 0.016     Low Low
cufflinks 0.621        
cufflinks 0.072     Low  
cufflinks 0.092     Low  
cufflinks 0.035     Low  
cufflinks 0.142        
cufflinks 3.781       High
cufflinks 0.105     Low  
cufflinks 5.048       High
cufflinks 0.031     Low Low
cufflinks 0.125     Low  

0 Strain