Gene : Seita.2G331600 S. italica v2.2
Defline:  (1 of 3) PTHR33307:SF2 - BNR/ASP-BOX REPEAT FAMILY PROTEIN Genomic Order:  3316
Name:  ? Seita.2G331600 Secondary Identifier:  ? PAC:32718735
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G331600 0.5kb upstream 0.5kb upstream 3927 true scaffold_2: 41771773-41775699 Setaria italica
Seita.2G331600 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 41771773-41772272 Setaria italica
Seita.2G331600 0.5kb downstream 0.5kb downstream 3927 true scaffold_2: 41772273-41776199 Setaria italica
Seita.2G331600 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 41775700-41776199 Setaria italica
Seita.2G331600 1.0kb upstream 1.0kb upstream 4427 true scaffold_2: 41771273-41775699 Setaria italica
Seita.2G331600 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 41771273-41772272 Setaria italica
Seita.2G331600 1.0kb downstream 1.0kb downstream 4427 true scaffold_2: 41772273-41776699 Setaria italica
Seita.2G331600 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 41775700-41776699 Setaria italica
Seita.2G331600 2.0kb upstream 2.0kb upstream 5427 true scaffold_2: 41770273-41775699 Setaria italica
Seita.2G331600 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 41770273-41772272 Setaria italica
Seita.2G331600 2.0kb downstream 2.0kb downstream 5427 true scaffold_2: 41772273-41777699 Setaria italica
Seita.2G331600 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 41775700-41777699 Setaria italica
Seita.2G331600 5.0kb upstream 5.0kb upstream 8427 true scaffold_2: 41767273-41775699 Setaria italica
Seita.2G331600 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 41767273-41772272 Setaria italica
Seita.2G331600 5.0kb downstream 5.0kb downstream 8427 true scaffold_2: 41772273-41780699 Setaria italica
Seita.2G331600 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 41775700-41780699 Setaria italica
Seita.2G331600 10.0kb upstream 10.0kb upstream 13427 true scaffold_2: 41762273-41775699 Setaria italica
Seita.2G331600 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 41762273-41772272 Setaria italica
Seita.2G331600 10.0kb downstream 10.0kb downstream 13427 true scaffold_2: 41772273-41785699 Setaria italica
Seita.2G331600 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 41775700-41785699 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194915 5267 Panicoideae View MSA
124591075 5269 Grass View MSA
122044355 5273 Angiosperm View MSA
121343996 5274 Embryophyte View MSA
123425973 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.98        
cufflinks 3.286        
cufflinks 0.342       Low
cufflinks 0.148       Low
cufflinks 0.385       Low
cufflinks 2.24        
cufflinks 1.695        
cufflinks 1.659        
cufflinks 1.386        
cufflinks 3.139        
cufflinks 2.97        
cufflinks 1.872        
cufflinks 1.453        
cufflinks 0.46       Low
cufflinks 1.913        
cufflinks 2.173        
cufflinks 2.321        
cufflinks 1.996        
cufflinks 0.203       Low
cufflinks 2.166        

0 Strain