Gene : Seita.2G331300 S. italica v2.2
Defline:  (1 of 1) PF00481//PF13088 - Protein phosphatase 2C (PP2C) // BNR repeat-like domain (BNR_2) Genomic Order:  3313
Name:  ? Seita.2G331300 Secondary Identifier:  ? PAC:32718547
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G331300 0.5kb upstream 0.5kb upstream 5692 true scaffold_2: 41754830-41760521 Setaria italica
Seita.2G331300 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 41754830-41755329 Setaria italica
Seita.2G331300 0.5kb downstream 0.5kb downstream 5692 true scaffold_2: 41755330-41761021 Setaria italica
Seita.2G331300 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 41760522-41761021 Setaria italica
Seita.2G331300 1.0kb upstream 1.0kb upstream 6192 true scaffold_2: 41754330-41760521 Setaria italica
Seita.2G331300 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 41754330-41755329 Setaria italica
Seita.2G331300 1.0kb downstream 1.0kb downstream 6192 true scaffold_2: 41755330-41761521 Setaria italica
Seita.2G331300 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 41760522-41761521 Setaria italica
Seita.2G331300 2.0kb upstream 2.0kb upstream 7192 true scaffold_2: 41753330-41760521 Setaria italica
Seita.2G331300 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 41753330-41755329 Setaria italica
Seita.2G331300 2.0kb downstream 2.0kb downstream 7192 true scaffold_2: 41755330-41762521 Setaria italica
Seita.2G331300 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 41760522-41762521 Setaria italica
Seita.2G331300 5.0kb upstream 5.0kb upstream 10192 true scaffold_2: 41750330-41760521 Setaria italica
Seita.2G331300 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 41750330-41755329 Setaria italica
Seita.2G331300 5.0kb downstream 5.0kb downstream 10192 true scaffold_2: 41755330-41765521 Setaria italica
Seita.2G331300 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 41760522-41765521 Setaria italica
Seita.2G331300 10.0kb upstream 10.0kb upstream 15192 true scaffold_2: 41745330-41760521 Setaria italica
Seita.2G331300 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 41745330-41755329 Setaria italica
Seita.2G331300 10.0kb downstream 10.0kb downstream 15192 true scaffold_2: 41755330-41770521 Setaria italica
Seita.2G331300 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 41760522-41770521 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194915 5267 Panicoideae View MSA
124591075 5269 Grass View MSA
122044355 5273 Angiosperm View MSA
121343996 5274 Embryophyte View MSA
123425973 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.823       High
cufflinks 0.523        
cufflinks 0.071     Low Low
cufflinks 0.06     Low Low
cufflinks 0.088       Low
cufflinks 0.507        
cufflinks 0.267        
cufflinks 0.214        
cufflinks 0.148        
cufflinks 0.56        
cufflinks 0.681        
cufflinks 0.56        
cufflinks 0.6        
cufflinks 0.158        
cufflinks 0.63        
cufflinks 0.211        
cufflinks 0.671        
cufflinks 0.219        
cufflinks 0.115       Low
cufflinks 0.661        

0 Strain