Gene : Seita.2G331500 S. italica v2.2
Defline:  (1 of 3) PTHR33307:SF2 - BNR/ASP-BOX REPEAT FAMILY PROTEIN Genomic Order:  3315
Name:  ? Seita.2G331500 Secondary Identifier:  ? PAC:32722789
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G331500 0.5kb upstream 0.5kb upstream 3946 true scaffold_2: 41763964-41767909 Setaria italica
Seita.2G331500 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 41763964-41764463 Setaria italica
Seita.2G331500 0.5kb downstream 0.5kb downstream 3946 true scaffold_2: 41764464-41768409 Setaria italica
Seita.2G331500 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 41767910-41768409 Setaria italica
Seita.2G331500 1.0kb upstream 1.0kb upstream 4446 true scaffold_2: 41763464-41767909 Setaria italica
Seita.2G331500 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 41763464-41764463 Setaria italica
Seita.2G331500 1.0kb downstream 1.0kb downstream 4446 true scaffold_2: 41764464-41768909 Setaria italica
Seita.2G331500 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 41767910-41768909 Setaria italica
Seita.2G331500 2.0kb upstream 2.0kb upstream 5446 true scaffold_2: 41762464-41767909 Setaria italica
Seita.2G331500 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 41762464-41764463 Setaria italica
Seita.2G331500 2.0kb downstream 2.0kb downstream 5446 true scaffold_2: 41764464-41769909 Setaria italica
Seita.2G331500 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 41767910-41769909 Setaria italica
Seita.2G331500 5.0kb upstream 5.0kb upstream 8446 true scaffold_2: 41759464-41767909 Setaria italica
Seita.2G331500 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 41759464-41764463 Setaria italica
Seita.2G331500 5.0kb downstream 5.0kb downstream 8446 true scaffold_2: 41764464-41772909 Setaria italica
Seita.2G331500 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 41767910-41772909 Setaria italica
Seita.2G331500 10.0kb upstream 10.0kb upstream 13446 true scaffold_2: 41754464-41767909 Setaria italica
Seita.2G331500 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 41754464-41764463 Setaria italica
Seita.2G331500 10.0kb downstream 10.0kb downstream 13446 true scaffold_2: 41764464-41777909 Setaria italica
Seita.2G331500 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 41767910-41777909 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194915 5267 Panicoideae View MSA
124591075 5269 Grass View MSA
122044355 5273 Angiosperm View MSA
121343996 5274 Embryophyte View MSA
123425973 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.382        
cufflinks 3.992        
cufflinks 2.59        
cufflinks 4.486        
cufflinks 4.045        
cufflinks 4.198        
cufflinks 4.487        
cufflinks 3.638        
cufflinks 5.332        
cufflinks 1.349       Low
cufflinks 1.967       Low
cufflinks 4.313        
cufflinks 5.16        
cufflinks 1.507       Low
cufflinks 2.545        
cufflinks 4.659        
cufflinks 7.028       High
cufflinks 6.057       High
cufflinks 2.724        
cufflinks 3.182        

0 Strain