Gene : Seita.2G331400 S. italica v2.2
Defline:  (1 of 1) 3.5.99.10 - 2-iminobutanoate/2-iminopropanoate deaminase / Enamine/imine deaminase Genomic Order:  3314
Name:  ? Seita.2G331400 Secondary Identifier:  ? PAC:32721794
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY0-1535 Setaria italica pathologic  
Sitalica PWY-6196 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G331400 0.5kb upstream 0.5kb upstream 3138 true scaffold_2: 41760490-41763627 Setaria italica
Seita.2G331400 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 41760490-41760989 Setaria italica
Seita.2G331400 0.5kb downstream 0.5kb downstream 3138 true scaffold_2: 41760990-41764127 Setaria italica
Seita.2G331400 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 41763628-41764127 Setaria italica
Seita.2G331400 1.0kb upstream 1.0kb upstream 3638 true scaffold_2: 41759990-41763627 Setaria italica
Seita.2G331400 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 41759990-41760989 Setaria italica
Seita.2G331400 1.0kb downstream 1.0kb downstream 3638 true scaffold_2: 41760990-41764627 Setaria italica
Seita.2G331400 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 41763628-41764627 Setaria italica
Seita.2G331400 2.0kb upstream 2.0kb upstream 4638 true scaffold_2: 41758990-41763627 Setaria italica
Seita.2G331400 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 41758990-41760989 Setaria italica
Seita.2G331400 2.0kb downstream 2.0kb downstream 4638 true scaffold_2: 41760990-41765627 Setaria italica
Seita.2G331400 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 41763628-41765627 Setaria italica
Seita.2G331400 5.0kb upstream 5.0kb upstream 7638 true scaffold_2: 41755990-41763627 Setaria italica
Seita.2G331400 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 41755990-41760989 Setaria italica
Seita.2G331400 5.0kb downstream 5.0kb downstream 7638 true scaffold_2: 41760990-41768627 Setaria italica
Seita.2G331400 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 41763628-41768627 Setaria italica
Seita.2G331400 10.0kb upstream 10.0kb upstream 12638 true scaffold_2: 41750990-41763627 Setaria italica
Seita.2G331400 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 41750990-41760989 Setaria italica
Seita.2G331400 10.0kb downstream 10.0kb downstream 12638 true scaffold_2: 41760990-41773627 Setaria italica
Seita.2G331400 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 41763628-41773627 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179932 5267 Panicoideae View MSA
124580300 5269 Grass View MSA
122047773 5273 Angiosperm View MSA
121349412 5274 Embryophyte View MSA
123426885 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.369     High  
cufflinks 22.084     High  
cufflinks 8.586       Low
cufflinks 8.67       Low
cufflinks 14.347     High  
cufflinks 23.143     High  
cufflinks 21.472     High  
cufflinks 57.501     High High
cufflinks 32.109     High High
cufflinks 47.324     High High
cufflinks 16.187     High  
cufflinks 22.737     High  
cufflinks 17.355     High  
cufflinks 15.594     High  
cufflinks 16.212     High  
cufflinks 11.019        
cufflinks 26.783     High  
cufflinks 7.979       Low
cufflinks 10.921        
cufflinks 25.766     High  

0 Strain