Gene : Seita.2G333900 S. italica v2.2
Defline:  (1 of 1) PTHR12668//PTHR12668:SF14 - TRANSMEMBRANE PROTEIN 14, 15 Genomic Order:  3339
Name:  ? Seita.2G333900 Secondary Identifier:  ? PAC:32720733
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G333900 0.5kb upstream 0.5kb upstream 3025 true scaffold_2: 41913025-41916049 Setaria italica
Seita.2G333900 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 41913025-41913524 Setaria italica
Seita.2G333900 0.5kb downstream 0.5kb downstream 3025 true scaffold_2: 41913525-41916549 Setaria italica
Seita.2G333900 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 41916050-41916549 Setaria italica
Seita.2G333900 1.0kb upstream 1.0kb upstream 3525 true scaffold_2: 41912525-41916049 Setaria italica
Seita.2G333900 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 41912525-41913524 Setaria italica
Seita.2G333900 1.0kb downstream 1.0kb downstream 3525 true scaffold_2: 41913525-41917049 Setaria italica
Seita.2G333900 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 41916050-41917049 Setaria italica
Seita.2G333900 2.0kb upstream 2.0kb upstream 4525 true scaffold_2: 41911525-41916049 Setaria italica
Seita.2G333900 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 41911525-41913524 Setaria italica
Seita.2G333900 2.0kb downstream 2.0kb downstream 4525 true scaffold_2: 41913525-41918049 Setaria italica
Seita.2G333900 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 41916050-41918049 Setaria italica
Seita.2G333900 5.0kb upstream 5.0kb upstream 7525 true scaffold_2: 41908525-41916049 Setaria italica
Seita.2G333900 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 41908525-41913524 Setaria italica
Seita.2G333900 5.0kb downstream 5.0kb downstream 7525 true scaffold_2: 41913525-41921049 Setaria italica
Seita.2G333900 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 41916050-41921049 Setaria italica
Seita.2G333900 10.0kb upstream 10.0kb upstream 12525 true scaffold_2: 41903525-41916049 Setaria italica
Seita.2G333900 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 41903525-41913524 Setaria italica
Seita.2G333900 10.0kb downstream 10.0kb downstream 12525 true scaffold_2: 41913525-41926049 Setaria italica
Seita.2G333900 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 41916050-41926049 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192001 5267 Panicoideae View MSA
124586519 5269 Grass View MSA
122043738 5273 Angiosperm View MSA
121351316 5274 Embryophyte View MSA
123426664 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.647        
cufflinks 3.684        
cufflinks 1.29       Low
cufflinks 0.983       Low
cufflinks 1.076       Low
cufflinks 3.869        
cufflinks 2.111        
cufflinks 3.229        
cufflinks 1.647        
cufflinks 10.971       High
cufflinks 3.649        
cufflinks 4.327        
cufflinks 4.562        
cufflinks 2.694        
cufflinks 4.641        
cufflinks 2.353        
cufflinks 5.406       High
cufflinks 2.377        
cufflinks 1.553       Low
cufflinks 3.981        

0 Strain