Gene : Seita.2G334200 S. italica v2.2
Defline:  (1 of 1) PTHR31355:SF7 - MICROTUBULE-ASSOCIATED PROTEIN SPIRAL2-LIKE-RELATED Genomic Order:  3342
Name:  ? Seita.2G334200 Secondary Identifier:  ? PAC:32721943
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G334200 0.5kb upstream 0.5kb upstream 7543 true scaffold_2: 41922996-41930538 Setaria italica
Seita.2G334200 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 41930039-41930538 Setaria italica
Seita.2G334200 0.5kb downstream 0.5kb downstream 7543 true scaffold_2: 41922496-41930038 Setaria italica
Seita.2G334200 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 41922496-41922995 Setaria italica
Seita.2G334200 1.0kb upstream 1.0kb upstream 8043 true scaffold_2: 41922996-41931038 Setaria italica
Seita.2G334200 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 41930039-41931038 Setaria italica
Seita.2G334200 1.0kb downstream 1.0kb downstream 8043 true scaffold_2: 41921996-41930038 Setaria italica
Seita.2G334200 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 41921996-41922995 Setaria italica
Seita.2G334200 2.0kb upstream 2.0kb upstream 9043 true scaffold_2: 41922996-41932038 Setaria italica
Seita.2G334200 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 41930039-41932038 Setaria italica
Seita.2G334200 2.0kb downstream 2.0kb downstream 9043 true scaffold_2: 41920996-41930038 Setaria italica
Seita.2G334200 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 41920996-41922995 Setaria italica
Seita.2G334200 5.0kb upstream 5.0kb upstream 12043 true scaffold_2: 41922996-41935038 Setaria italica
Seita.2G334200 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 41930039-41935038 Setaria italica
Seita.2G334200 5.0kb downstream 5.0kb downstream 12043 true scaffold_2: 41917996-41930038 Setaria italica
Seita.2G334200 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 41917996-41922995 Setaria italica
Seita.2G334200 10.0kb upstream 10.0kb upstream 17043 true scaffold_2: 41922996-41940038 Setaria italica
Seita.2G334200 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 41930039-41940038 Setaria italica
Seita.2G334200 10.0kb downstream 10.0kb downstream 17043 true scaffold_2: 41912996-41930038 Setaria italica
Seita.2G334200 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 41912996-41922995 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188812 5267 Panicoideae View MSA
124572147 5269 Grass View MSA
122043238 5273 Angiosperm View MSA
121344620 5274 Embryophyte View MSA
123426800 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.051        
cufflinks 6.69       High
cufflinks 0.876       Low
cufflinks 0.638       Low
cufflinks 1.096        
cufflinks 5.619       High
cufflinks 4.305        
cufflinks 2.786        
cufflinks 3.103        
cufflinks 2.805        
cufflinks 4.537       High
cufflinks 2.008        
cufflinks 2.318        
cufflinks 0.791       Low
cufflinks 4.176        
cufflinks 2.056        
cufflinks 2.373        
cufflinks 1.299        
cufflinks 0.584       Low
cufflinks 3.259        

0 Strain