Gene : Seita.2G336500 S. italica v2.2
Defline:  (1 of 1) PTHR22957//PTHR22957:SF272 - TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN Genomic Order:  3365
Name:  ? Seita.2G336500 Secondary Identifier:  ? PAC:32718140
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G336500 0.5kb upstream 0.5kb upstream 5413 true scaffold_2: 42080885-42086297 Setaria italica
Seita.2G336500 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 42080885-42081384 Setaria italica
Seita.2G336500 0.5kb downstream 0.5kb downstream 5413 true scaffold_2: 42081385-42086797 Setaria italica
Seita.2G336500 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 42086298-42086797 Setaria italica
Seita.2G336500 1.0kb upstream 1.0kb upstream 5913 true scaffold_2: 42080385-42086297 Setaria italica
Seita.2G336500 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 42080385-42081384 Setaria italica
Seita.2G336500 1.0kb downstream 1.0kb downstream 5913 true scaffold_2: 42081385-42087297 Setaria italica
Seita.2G336500 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 42086298-42087297 Setaria italica
Seita.2G336500 2.0kb upstream 2.0kb upstream 6913 true scaffold_2: 42079385-42086297 Setaria italica
Seita.2G336500 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 42079385-42081384 Setaria italica
Seita.2G336500 2.0kb downstream 2.0kb downstream 6913 true scaffold_2: 42081385-42088297 Setaria italica
Seita.2G336500 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 42086298-42088297 Setaria italica
Seita.2G336500 5.0kb upstream 5.0kb upstream 9913 true scaffold_2: 42076385-42086297 Setaria italica
Seita.2G336500 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 42076385-42081384 Setaria italica
Seita.2G336500 5.0kb downstream 5.0kb downstream 9913 true scaffold_2: 42081385-42091297 Setaria italica
Seita.2G336500 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 42086298-42091297 Setaria italica
Seita.2G336500 10.0kb upstream 10.0kb upstream 14913 true scaffold_2: 42071385-42086297 Setaria italica
Seita.2G336500 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 42071385-42081384 Setaria italica
Seita.2G336500 10.0kb downstream 10.0kb downstream 14913 true scaffold_2: 42081385-42096297 Setaria italica
Seita.2G336500 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 42086298-42096297 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199135 5267 Panicoideae View MSA
124578882 5269 Grass View MSA
122046428 5273 Angiosperm View MSA
121350403 5274 Embryophyte View MSA
123428253 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.278     High High
cufflinks 5.068        
cufflinks 5.448        
cufflinks 5.363        
cufflinks 10.495        
cufflinks 5.8        
cufflinks 27.076     High High
cufflinks 12.645        
cufflinks 17.261     High  
cufflinks 9.68        
cufflinks 18.726     High  
cufflinks 6.62        
cufflinks 4.368       Low
cufflinks 5.275        
cufflinks 4.933        
cufflinks 38.385     High High
cufflinks 3.995       Low
cufflinks 25.079     High High
cufflinks 4.947        
cufflinks 4.896        

0 Strain