Gene : Seita.2G336900 S. italica v2.2
Genomic Order:  3369 Name:  ? Seita.2G336900
Secondary Identifier:  ? PAC:32720929
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G336900 0.5kb upstream 0.5kb upstream 1836 true scaffold_2: 42108885-42110720 Setaria italica
Seita.2G336900 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 42110221-42110720 Setaria italica
Seita.2G336900 0.5kb downstream 0.5kb downstream 1836 true scaffold_2: 42108385-42110220 Setaria italica
Seita.2G336900 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 42108385-42108884 Setaria italica
Seita.2G336900 1.0kb upstream 1.0kb upstream 2336 true scaffold_2: 42108885-42111220 Setaria italica
Seita.2G336900 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 42110221-42111220 Setaria italica
Seita.2G336900 1.0kb downstream 1.0kb downstream 2336 true scaffold_2: 42107885-42110220 Setaria italica
Seita.2G336900 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 42107885-42108884 Setaria italica
Seita.2G336900 2.0kb upstream 2.0kb upstream 3336 true scaffold_2: 42108885-42112220 Setaria italica
Seita.2G336900 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 42110221-42112220 Setaria italica
Seita.2G336900 2.0kb downstream 2.0kb downstream 3336 true scaffold_2: 42106885-42110220 Setaria italica
Seita.2G336900 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 42106885-42108884 Setaria italica
Seita.2G336900 5.0kb upstream 5.0kb upstream 6336 true scaffold_2: 42108885-42115220 Setaria italica
Seita.2G336900 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 42110221-42115220 Setaria italica
Seita.2G336900 5.0kb downstream 5.0kb downstream 6336 true scaffold_2: 42103885-42110220 Setaria italica
Seita.2G336900 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 42103885-42108884 Setaria italica
Seita.2G336900 10.0kb upstream 10.0kb upstream 11336 true scaffold_2: 42108885-42120220 Setaria italica
Seita.2G336900 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 42110221-42120220 Setaria italica
Seita.2G336900 10.0kb downstream 10.0kb downstream 11336 true scaffold_2: 42098885-42110220 Setaria italica
Seita.2G336900 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 42098885-42108884 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121995626 5273 Angiosperm View MSA
122181286 5267 Panicoideae View MSA
124589067 5269 Grass View MSA
121351664 5274 Embryophyte View MSA
123382268 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.014     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.013     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.131     Low  
cufflinks 0.049     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.114     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.086     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.163       High

0 Strain