Gene : Seita.2G339100 S. italica v2.2
Defline:  (1 of 1) PTHR12202:SF0 - PROTEIN F58B3.4 Genomic Order:  3391
Name:  ? Seita.2G339100 Secondary Identifier:  ? PAC:32720047
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G339100 0.5kb upstream 0.5kb upstream 5287 true scaffold_2: 42249671-42254957 Setaria italica
Seita.2G339100 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 42249671-42250170 Setaria italica
Seita.2G339100 0.5kb downstream 0.5kb downstream 5287 true scaffold_2: 42250171-42255457 Setaria italica
Seita.2G339100 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 42254958-42255457 Setaria italica
Seita.2G339100 1.0kb upstream 1.0kb upstream 5787 true scaffold_2: 42249171-42254957 Setaria italica
Seita.2G339100 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 42249171-42250170 Setaria italica
Seita.2G339100 1.0kb downstream 1.0kb downstream 5787 true scaffold_2: 42250171-42255957 Setaria italica
Seita.2G339100 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 42254958-42255957 Setaria italica
Seita.2G339100 2.0kb upstream 2.0kb upstream 6787 true scaffold_2: 42248171-42254957 Setaria italica
Seita.2G339100 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 42248171-42250170 Setaria italica
Seita.2G339100 2.0kb downstream 2.0kb downstream 6787 true scaffold_2: 42250171-42256957 Setaria italica
Seita.2G339100 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 42254958-42256957 Setaria italica
Seita.2G339100 5.0kb upstream 5.0kb upstream 9787 true scaffold_2: 42245171-42254957 Setaria italica
Seita.2G339100 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 42245171-42250170 Setaria italica
Seita.2G339100 5.0kb downstream 5.0kb downstream 9787 true scaffold_2: 42250171-42259957 Setaria italica
Seita.2G339100 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 42254958-42259957 Setaria italica
Seita.2G339100 10.0kb upstream 10.0kb upstream 14787 true scaffold_2: 42240171-42254957 Setaria italica
Seita.2G339100 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 42240171-42250170 Setaria italica
Seita.2G339100 10.0kb downstream 10.0kb downstream 14787 true scaffold_2: 42250171-42264957 Setaria italica
Seita.2G339100 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 42254958-42264957 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177517 5267 Panicoideae View MSA
124575777 5269 Grass View MSA
122046385 5273 Angiosperm View MSA
121346233 5274 Embryophyte View MSA
123423804 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.11        
cufflinks 6.233       High
cufflinks 4.382        
cufflinks 3.448        
cufflinks 3.733        
cufflinks 5.768        
cufflinks 4.72        
cufflinks 3.435        
cufflinks 4.974        
cufflinks 1.756       Low
cufflinks 5.302        
cufflinks 5.419        
cufflinks 3.385        
cufflinks 4.585        
cufflinks 6.817       High
cufflinks 4.27        
cufflinks 6.074        
cufflinks 5.541        
cufflinks 3.431        
cufflinks 4.967        

0 Strain