Gene : Seita.2G337900 S. italica v2.2
Defline:  (1 of 1) PTHR31062:SF1 - XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED Genomic Order:  3379
Name:  ? Seita.2G337900 Secondary Identifier:  ? PAC:32720807
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G337900 0.5kb upstream 0.5kb upstream 3208 true scaffold_2: 42183317-42186524 Setaria italica
Seita.2G337900 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 42183317-42183816 Setaria italica
Seita.2G337900 0.5kb downstream 0.5kb downstream 3208 true scaffold_2: 42183817-42187024 Setaria italica
Seita.2G337900 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 42186525-42187024 Setaria italica
Seita.2G337900 1.0kb upstream 1.0kb upstream 3708 true scaffold_2: 42182817-42186524 Setaria italica
Seita.2G337900 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 42182817-42183816 Setaria italica
Seita.2G337900 1.0kb downstream 1.0kb downstream 3708 true scaffold_2: 42183817-42187524 Setaria italica
Seita.2G337900 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 42186525-42187524 Setaria italica
Seita.2G337900 2.0kb upstream 2.0kb upstream 4708 true scaffold_2: 42181817-42186524 Setaria italica
Seita.2G337900 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 42181817-42183816 Setaria italica
Seita.2G337900 2.0kb downstream 2.0kb downstream 4708 true scaffold_2: 42183817-42188524 Setaria italica
Seita.2G337900 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 42186525-42188524 Setaria italica
Seita.2G337900 5.0kb upstream 5.0kb upstream 7708 true scaffold_2: 42178817-42186524 Setaria italica
Seita.2G337900 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 42178817-42183816 Setaria italica
Seita.2G337900 5.0kb downstream 5.0kb downstream 7708 true scaffold_2: 42183817-42191524 Setaria italica
Seita.2G337900 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 42186525-42191524 Setaria italica
Seita.2G337900 10.0kb upstream 10.0kb upstream 12708 true scaffold_2: 42173817-42186524 Setaria italica
Seita.2G337900 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 42173817-42183816 Setaria italica
Seita.2G337900 10.0kb downstream 10.0kb downstream 12708 true scaffold_2: 42183817-42196524 Setaria italica
Seita.2G337900 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 42186525-42196524 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189563 5267 Panicoideae View MSA
124577913 5269 Grass View MSA
122047013 5273 Angiosperm View MSA
121352157 5274 Embryophyte View MSA
123382575 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.446        
cufflinks 2.624        
cufflinks 0.542       Low
cufflinks 0.949        
cufflinks 0.76       Low
cufflinks 3.179        
cufflinks 3.36        
cufflinks 2.149        
cufflinks 2.056        
cufflinks 9.694       High
cufflinks 4.779        
cufflinks 2.921        
cufflinks 2.229        
cufflinks 0.948        
cufflinks 3.982        
cufflinks 2.429        
cufflinks 4.76        
cufflinks 1.442        
cufflinks 0.245       Low
cufflinks 6.564       High

0 Strain