Gene : Seita.2G338200 S. italica v2.2
Defline:  (1 of 4) KOG4595 - Uncharacterized conserved protein Genomic Order:  3382
Name:  ? Seita.2G338200 Secondary Identifier:  ? PAC:32719121
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G338200 0.5kb upstream 0.5kb upstream 3606 true scaffold_2: 42205289-42208894 Setaria italica
Seita.2G338200 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 42205289-42205788 Setaria italica
Seita.2G338200 0.5kb downstream 0.5kb downstream 3606 true scaffold_2: 42205789-42209394 Setaria italica
Seita.2G338200 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 42208895-42209394 Setaria italica
Seita.2G338200 1.0kb upstream 1.0kb upstream 4106 true scaffold_2: 42204789-42208894 Setaria italica
Seita.2G338200 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 42204789-42205788 Setaria italica
Seita.2G338200 1.0kb downstream 1.0kb downstream 4106 true scaffold_2: 42205789-42209894 Setaria italica
Seita.2G338200 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 42208895-42209894 Setaria italica
Seita.2G338200 2.0kb upstream 2.0kb upstream 5106 true scaffold_2: 42203789-42208894 Setaria italica
Seita.2G338200 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 42203789-42205788 Setaria italica
Seita.2G338200 2.0kb downstream 2.0kb downstream 5106 true scaffold_2: 42205789-42210894 Setaria italica
Seita.2G338200 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 42208895-42210894 Setaria italica
Seita.2G338200 5.0kb upstream 5.0kb upstream 8106 true scaffold_2: 42200789-42208894 Setaria italica
Seita.2G338200 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 42200789-42205788 Setaria italica
Seita.2G338200 5.0kb downstream 5.0kb downstream 8106 true scaffold_2: 42205789-42213894 Setaria italica
Seita.2G338200 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 42208895-42213894 Setaria italica
Seita.2G338200 10.0kb upstream 10.0kb upstream 13106 true scaffold_2: 42195789-42208894 Setaria italica
Seita.2G338200 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 42195789-42205788 Setaria italica
Seita.2G338200 10.0kb downstream 10.0kb downstream 13106 true scaffold_2: 42205789-42218894 Setaria italica
Seita.2G338200 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 42208895-42218894 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122066070 5267 Panicoideae View MSA
124590217 5269 Grass View MSA
122044441 5273 Angiosperm View MSA
121344709 5274 Embryophyte View MSA
123425132 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.111     Low  
cufflinks 0.138        
cufflinks 0.048     Low Low
cufflinks 0.035     Low Low
cufflinks 0.08     Low  
cufflinks 0.155        
cufflinks 0.046     Low Low
cufflinks 0.194       High
cufflinks 0.142        
cufflinks 0.242     Low High
cufflinks 0.123     Low  
cufflinks 0.131        
cufflinks 0.1     Low  
cufflinks 0.151        
cufflinks 0.094     Low  
cufflinks 0.073     Low  
cufflinks 0.163        
cufflinks 0.052     Low Low
cufflinks 0.066     Low  
cufflinks 0.109     Low  

0 Strain