Gene : Seita.2G343000 S. italica v2.2
Defline:  (1 of 1) PTHR33399:SF3 - OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC-RELATED Genomic Order:  3430
Name:  ? Seita.2G343000 Secondary Identifier:  ? PAC:32722995
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G343000 0.5kb upstream 0.5kb upstream 1877 true scaffold_2: 42515555-42517431 Setaria italica
Seita.2G343000 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 42515555-42516054 Setaria italica
Seita.2G343000 0.5kb downstream 0.5kb downstream 1877 true scaffold_2: 42516055-42517931 Setaria italica
Seita.2G343000 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 42517432-42517931 Setaria italica
Seita.2G343000 1.0kb upstream 1.0kb upstream 2377 true scaffold_2: 42515055-42517431 Setaria italica
Seita.2G343000 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 42515055-42516054 Setaria italica
Seita.2G343000 1.0kb downstream 1.0kb downstream 2377 true scaffold_2: 42516055-42518431 Setaria italica
Seita.2G343000 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 42517432-42518431 Setaria italica
Seita.2G343000 2.0kb upstream 2.0kb upstream 3377 true scaffold_2: 42514055-42517431 Setaria italica
Seita.2G343000 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 42514055-42516054 Setaria italica
Seita.2G343000 2.0kb downstream 2.0kb downstream 3377 true scaffold_2: 42516055-42519431 Setaria italica
Seita.2G343000 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 42517432-42519431 Setaria italica
Seita.2G343000 5.0kb upstream 5.0kb upstream 6377 true scaffold_2: 42511055-42517431 Setaria italica
Seita.2G343000 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 42511055-42516054 Setaria italica
Seita.2G343000 5.0kb downstream 5.0kb downstream 6377 true scaffold_2: 42516055-42522431 Setaria italica
Seita.2G343000 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 42517432-42522431 Setaria italica
Seita.2G343000 10.0kb upstream 10.0kb upstream 11377 true scaffold_2: 42506055-42517431 Setaria italica
Seita.2G343000 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 42506055-42516054 Setaria italica
Seita.2G343000 10.0kb downstream 10.0kb downstream 11377 true scaffold_2: 42516055-42527431 Setaria italica
Seita.2G343000 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 42517432-42527431 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175316 5267 Panicoideae View MSA
124582476 5269 Grass View MSA
122043772 5273 Angiosperm View MSA
121344186 5274 Embryophyte View MSA
123427004 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 35.642     High  
cufflinks 68.065     High  
cufflinks 152.693     High  
cufflinks 327.181     High  
cufflinks 557.02     High High
cufflinks 53.475     High  
cufflinks 348.902     High High
cufflinks 562.965     High High
cufflinks 379.786     High High
cufflinks 42.626     High  
cufflinks 15.356     High  
cufflinks 3.505       Low
cufflinks 6.236       Low
cufflinks 70.468     High  
cufflinks 1.266       Low
cufflinks 235.774     High  
cufflinks 3.209       Low
cufflinks 20.423     High  
cufflinks 216.293     High  
cufflinks 2.399       Low

0 Strain