Gene : Seita.2G343700 S. italica v2.2
Defline:  (1 of 57) PF03514 - GRAS domain family (GRAS) Genomic Order:  3437
Name:  ? Seita.2G343700 Secondary Identifier:  ? PAC:32719436
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G343700 0.5kb upstream 0.5kb upstream 4709 true scaffold_2: 42553722-42558430 Setaria italica
Seita.2G343700 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 42553722-42554221 Setaria italica
Seita.2G343700 0.5kb downstream 0.5kb downstream 4709 true scaffold_2: 42554222-42558930 Setaria italica
Seita.2G343700 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 42558431-42558930 Setaria italica
Seita.2G343700 1.0kb upstream 1.0kb upstream 5209 true scaffold_2: 42553222-42558430 Setaria italica
Seita.2G343700 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 42553222-42554221 Setaria italica
Seita.2G343700 1.0kb downstream 1.0kb downstream 5209 true scaffold_2: 42554222-42559430 Setaria italica
Seita.2G343700 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 42558431-42559430 Setaria italica
Seita.2G343700 2.0kb upstream 2.0kb upstream 6209 true scaffold_2: 42552222-42558430 Setaria italica
Seita.2G343700 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 42552222-42554221 Setaria italica
Seita.2G343700 2.0kb downstream 2.0kb downstream 6209 true scaffold_2: 42554222-42560430 Setaria italica
Seita.2G343700 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 42558431-42560430 Setaria italica
Seita.2G343700 5.0kb upstream 5.0kb upstream 9209 true scaffold_2: 42549222-42558430 Setaria italica
Seita.2G343700 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 42549222-42554221 Setaria italica
Seita.2G343700 5.0kb downstream 5.0kb downstream 9209 true scaffold_2: 42554222-42563430 Setaria italica
Seita.2G343700 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 42558431-42563430 Setaria italica
Seita.2G343700 10.0kb upstream 10.0kb upstream 14209 true scaffold_2: 42544222-42558430 Setaria italica
Seita.2G343700 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 42544222-42554221 Setaria italica
Seita.2G343700 10.0kb downstream 10.0kb downstream 14209 true scaffold_2: 42554222-42568430 Setaria italica
Seita.2G343700 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 42558431-42568430 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197266 5267 Panicoideae View MSA
124579695 5269 Grass View MSA
122048977 5273 Angiosperm View MSA
121350442 5274 Embryophyte View MSA
123381734 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 36.348     High  
cufflinks 10.075       Low
cufflinks 14.052     High  
cufflinks 22.668     High  
cufflinks 72.965     High High
cufflinks 9.335       Low
cufflinks 91.574     High High
cufflinks 9.179       Low
cufflinks 81.866     High High
cufflinks 16.267     High  
cufflinks 20.664     High  
cufflinks 24.912     High  
cufflinks 18.421     High  
cufflinks 74.348     High High
cufflinks 19.12     High  
cufflinks 28.39     High  
cufflinks 14.857     High  
cufflinks 33.937     High  
cufflinks 22.563     High  
cufflinks 16.859     High  

0 Strain