Gene : Seita.2G351600 S. italica v2.2
Defline:  (1 of 1) PTHR21649:SF6 - CHLOROPHYLL A-B BINDING PROTEIN CP29.1, CHLOROPLASTIC-RELATED Genomic Order:  3516
Name:  ? Seita.2G351600 Secondary Identifier:  ? PAC:32721091
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G351600 0.5kb upstream 0.5kb upstream 2026 true scaffold_2: 43196630-43198655 Setaria italica
Seita.2G351600 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 43198156-43198655 Setaria italica
Seita.2G351600 0.5kb downstream 0.5kb downstream 2026 true scaffold_2: 43196130-43198155 Setaria italica
Seita.2G351600 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 43196130-43196629 Setaria italica
Seita.2G351600 1.0kb upstream 1.0kb upstream 2526 true scaffold_2: 43196630-43199155 Setaria italica
Seita.2G351600 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 43198156-43199155 Setaria italica
Seita.2G351600 1.0kb downstream 1.0kb downstream 2526 true scaffold_2: 43195630-43198155 Setaria italica
Seita.2G351600 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 43195630-43196629 Setaria italica
Seita.2G351600 2.0kb upstream 2.0kb upstream 3526 true scaffold_2: 43196630-43200155 Setaria italica
Seita.2G351600 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 43198156-43200155 Setaria italica
Seita.2G351600 2.0kb downstream 2.0kb downstream 3526 true scaffold_2: 43194630-43198155 Setaria italica
Seita.2G351600 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 43194630-43196629 Setaria italica
Seita.2G351600 5.0kb upstream 5.0kb upstream 6526 true scaffold_2: 43196630-43203155 Setaria italica
Seita.2G351600 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 43198156-43203155 Setaria italica
Seita.2G351600 5.0kb downstream 5.0kb downstream 6526 true scaffold_2: 43191630-43198155 Setaria italica
Seita.2G351600 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 43191630-43196629 Setaria italica
Seita.2G351600 10.0kb upstream 10.0kb upstream 11526 true scaffold_2: 43196630-43208155 Setaria italica
Seita.2G351600 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 43198156-43208155 Setaria italica
Seita.2G351600 10.0kb downstream 10.0kb downstream 11526 true scaffold_2: 43186630-43198155 Setaria italica
Seita.2G351600 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 43186630-43196629 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186425 5267 Panicoideae View MSA
124577958 5269 Grass View MSA
122044716 5273 Angiosperm View MSA
121345249 5274 Embryophyte View MSA
123428168 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.537     High  
cufflinks 191.417     High  
cufflinks 207.463     High  
cufflinks 463.17     High  
cufflinks 1011.341     High High
cufflinks 131.23     High  
cufflinks 516.23     High  
cufflinks 843.408     High  
cufflinks 575.878     High  
cufflinks 9.911        
cufflinks 7.184        
cufflinks 0.065     Low Low
cufflinks 3.845        
cufflinks 201.48     High  
cufflinks 0.389       Low
cufflinks 402.683     High  
cufflinks 0.108     Low Low
cufflinks 18.762     High  
cufflinks 345.423     High  
cufflinks 0.011     Low Low

0 Strain