Gene : Seita.2G353200 S. italica v2.2
Defline:  (1 of 2) PTHR12358//PTHR12358:SF42 - SPHINGOSINE KINASE Genomic Order:  3532
Name:  ? Seita.2G353200 Secondary Identifier:  ? PAC:32718731
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5129 Setaria italica pathologic  
Sitalica PWY-6483 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G353200 0.5kb upstream 0.5kb upstream 4949 true scaffold_2: 43301408-43306356 Setaria italica
Seita.2G353200 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 43301408-43301907 Setaria italica
Seita.2G353200 0.5kb downstream 0.5kb downstream 4949 true scaffold_2: 43301908-43306856 Setaria italica
Seita.2G353200 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 43306357-43306856 Setaria italica
Seita.2G353200 1.0kb upstream 1.0kb upstream 5449 true scaffold_2: 43300908-43306356 Setaria italica
Seita.2G353200 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 43300908-43301907 Setaria italica
Seita.2G353200 1.0kb downstream 1.0kb downstream 5449 true scaffold_2: 43301908-43307356 Setaria italica
Seita.2G353200 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 43306357-43307356 Setaria italica
Seita.2G353200 2.0kb upstream 2.0kb upstream 6449 true scaffold_2: 43299908-43306356 Setaria italica
Seita.2G353200 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 43299908-43301907 Setaria italica
Seita.2G353200 2.0kb downstream 2.0kb downstream 6449 true scaffold_2: 43301908-43308356 Setaria italica
Seita.2G353200 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 43306357-43308356 Setaria italica
Seita.2G353200 5.0kb upstream 5.0kb upstream 9449 true scaffold_2: 43296908-43306356 Setaria italica
Seita.2G353200 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 43296908-43301907 Setaria italica
Seita.2G353200 5.0kb downstream 5.0kb downstream 9449 true scaffold_2: 43301908-43311356 Setaria italica
Seita.2G353200 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 43306357-43311356 Setaria italica
Seita.2G353200 10.0kb upstream 10.0kb upstream 14449 true scaffold_2: 43291908-43306356 Setaria italica
Seita.2G353200 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 43291908-43301907 Setaria italica
Seita.2G353200 10.0kb downstream 10.0kb downstream 14449 true scaffold_2: 43301908-43316356 Setaria italica
Seita.2G353200 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 43306357-43316356 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184562 5267 Panicoideae View MSA
124586280 5269 Grass View MSA
122045440 5273 Angiosperm View MSA
121350923 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.333        
cufflinks 7.197        
cufflinks 12.957     High High
cufflinks 15.157     High High
cufflinks 11.197     High  
cufflinks 7.511        
cufflinks 7.826        
cufflinks 6.315       Low
cufflinks 5.752       Low
cufflinks 6.723       Low
cufflinks 6.772       Low
cufflinks 9.807        
cufflinks 14.492     High High
cufflinks 11.684        
cufflinks 13.111       High
cufflinks 8.084        
cufflinks 9.982        
cufflinks 9.813        
cufflinks 9.792        
cufflinks 10.771        

0 Strain