Gene : Seita.2G353300 S. italica v2.2
Defline:  (1 of 1) PTHR23336//PTHR23336:SF25 - ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. Genomic Order:  3533
Name:  ? Seita.2G353300 Secondary Identifier:  ? PAC:32718281
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G353300 0.5kb upstream 0.5kb upstream 8872 true scaffold_2: 43316910-43325781 Setaria italica
Seita.2G353300 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 43316910-43317409 Setaria italica
Seita.2G353300 0.5kb downstream 0.5kb downstream 8872 true scaffold_2: 43317410-43326281 Setaria italica
Seita.2G353300 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 43325782-43326281 Setaria italica
Seita.2G353300 1.0kb upstream 1.0kb upstream 9372 true scaffold_2: 43316410-43325781 Setaria italica
Seita.2G353300 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 43316410-43317409 Setaria italica
Seita.2G353300 1.0kb downstream 1.0kb downstream 9372 true scaffold_2: 43317410-43326781 Setaria italica
Seita.2G353300 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 43325782-43326781 Setaria italica
Seita.2G353300 2.0kb upstream 2.0kb upstream 10372 true scaffold_2: 43315410-43325781 Setaria italica
Seita.2G353300 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 43315410-43317409 Setaria italica
Seita.2G353300 2.0kb downstream 2.0kb downstream 10372 true scaffold_2: 43317410-43327781 Setaria italica
Seita.2G353300 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 43325782-43327781 Setaria italica
Seita.2G353300 5.0kb upstream 5.0kb upstream 13372 true scaffold_2: 43312410-43325781 Setaria italica
Seita.2G353300 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 43312410-43317409 Setaria italica
Seita.2G353300 5.0kb downstream 5.0kb downstream 13372 true scaffold_2: 43317410-43330781 Setaria italica
Seita.2G353300 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 43325782-43330781 Setaria italica
Seita.2G353300 10.0kb upstream 10.0kb upstream 18372 true scaffold_2: 43307410-43325781 Setaria italica
Seita.2G353300 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 43307410-43317409 Setaria italica
Seita.2G353300 10.0kb downstream 10.0kb downstream 18372 true scaffold_2: 43317410-43335781 Setaria italica
Seita.2G353300 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 43325782-43335781 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187846 5267 Panicoideae View MSA
124573908 5269 Grass View MSA
122049123 5273 Angiosperm View MSA
121350931 5274 Embryophyte View MSA
123428387 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.565     High  
cufflinks 18.875     High  
cufflinks 12.375     High  
cufflinks 10.174       Low
cufflinks 8.249       Low
cufflinks 19.537     High  
cufflinks 14.602     High  
cufflinks 11.695        
cufflinks 8.908       Low
cufflinks 18.413     High  
cufflinks 18.941     High  
cufflinks 17.055     High  
cufflinks 17.73     High  
cufflinks 12.871        
cufflinks 33.241     High High
cufflinks 22.537     High  
cufflinks 18.636     High  
cufflinks 30.868     High High
cufflinks 15.135     High  
cufflinks 17.87     High  

0 Strain