Gene : Seita.2G432900 S. italica v2.2
Defline:  (1 of 1) PTHR23336:SF10 - B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1-RELATED Genomic Order:  4329
Name:  ? Seita.2G432900 Secondary Identifier:  ? PAC:32723350
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G432900 0.5kb upstream 0.5kb upstream 7352 true scaffold_2: 48348782-48356133 Setaria italica
Seita.2G432900 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 48355634-48356133 Setaria italica
Seita.2G432900 0.5kb downstream 0.5kb downstream 7352 true scaffold_2: 48348282-48355633 Setaria italica
Seita.2G432900 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 48348282-48348781 Setaria italica
Seita.2G432900 1.0kb upstream 1.0kb upstream 7852 true scaffold_2: 48348782-48356633 Setaria italica
Seita.2G432900 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 48355634-48356633 Setaria italica
Seita.2G432900 1.0kb downstream 1.0kb downstream 7852 true scaffold_2: 48347782-48355633 Setaria italica
Seita.2G432900 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 48347782-48348781 Setaria italica
Seita.2G432900 2.0kb upstream 2.0kb upstream 8852 true scaffold_2: 48348782-48357633 Setaria italica
Seita.2G432900 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 48355634-48357633 Setaria italica
Seita.2G432900 2.0kb downstream 2.0kb downstream 8852 true scaffold_2: 48346782-48355633 Setaria italica
Seita.2G432900 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 48346782-48348781 Setaria italica
Seita.2G432900 5.0kb upstream 5.0kb upstream 11852 true scaffold_2: 48348782-48360633 Setaria italica
Seita.2G432900 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 48355634-48360633 Setaria italica
Seita.2G432900 5.0kb downstream 5.0kb downstream 11852 true scaffold_2: 48343782-48355633 Setaria italica
Seita.2G432900 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 48343782-48348781 Setaria italica
Seita.2G432900 10.0kb upstream 10.0kb upstream 16852 true scaffold_2: 48348782-48365633 Setaria italica
Seita.2G432900 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 48355634-48365633 Setaria italica
Seita.2G432900 10.0kb downstream 10.0kb downstream 16852 true scaffold_2: 48338782-48355633 Setaria italica
Seita.2G432900 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 48338782-48348781 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178827 5267 Panicoideae View MSA
124580725 5269 Grass View MSA
122049123 5273 Angiosperm View MSA
121350931 5274 Embryophyte View MSA
123428387 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.342     High  
cufflinks 33.28     High High
cufflinks 13.472     High  
cufflinks 14.006     High  
cufflinks 14.979     High  
cufflinks 39.301     High High
cufflinks 37.15     High High
cufflinks 11.131       Low
cufflinks 18.955     High  
cufflinks 16.335     High  
cufflinks 23.066     High  
cufflinks 12.1       Low
cufflinks 37.48     High High
cufflinks 13.877     High  
cufflinks 28.126     High  
cufflinks 25.486     High  
cufflinks 14.78     High  
cufflinks 14.333     High  
cufflinks 10.957       Low
cufflinks 22.736     High  

0 Strain