Gene : Seita.2G436100 S. italica v2.2
Defline:  (1 of 6) PF14200 - Ricin-type beta-trefoil lectin domain-like (RicinB_lectin_2) Genomic Order:  4361
Name:  ? Seita.2G436100 Secondary Identifier:  ? PAC:32722168
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G436100 0.5kb upstream 0.5kb upstream 2885 true scaffold_2: 48616793-48619677 Setaria italica
Seita.2G436100 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 48616793-48617292 Setaria italica
Seita.2G436100 0.5kb downstream 0.5kb downstream 2885 true scaffold_2: 48617293-48620177 Setaria italica
Seita.2G436100 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 48619678-48620177 Setaria italica
Seita.2G436100 1.0kb upstream 1.0kb upstream 3385 true scaffold_2: 48616293-48619677 Setaria italica
Seita.2G436100 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 48616293-48617292 Setaria italica
Seita.2G436100 1.0kb downstream 1.0kb downstream 3385 true scaffold_2: 48617293-48620677 Setaria italica
Seita.2G436100 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 48619678-48620677 Setaria italica
Seita.2G436100 2.0kb upstream 2.0kb upstream 4385 true scaffold_2: 48615293-48619677 Setaria italica
Seita.2G436100 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 48615293-48617292 Setaria italica
Seita.2G436100 2.0kb downstream 2.0kb downstream 4385 true scaffold_2: 48617293-48621677 Setaria italica
Seita.2G436100 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 48619678-48621677 Setaria italica
Seita.2G436100 5.0kb upstream 5.0kb upstream 7385 true scaffold_2: 48612293-48619677 Setaria italica
Seita.2G436100 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 48612293-48617292 Setaria italica
Seita.2G436100 5.0kb downstream 5.0kb downstream 7385 true scaffold_2: 48617293-48624677 Setaria italica
Seita.2G436100 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 48619678-48624677 Setaria italica
Seita.2G436100 10.0kb upstream 10.0kb upstream 12385 true scaffold_2: 48607293-48619677 Setaria italica
Seita.2G436100 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 48607293-48617292 Setaria italica
Seita.2G436100 10.0kb downstream 10.0kb downstream 12385 true scaffold_2: 48617293-48629677 Setaria italica
Seita.2G436100 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 48619678-48629677 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184933 5267 Panicoideae View MSA
124573741 5269 Grass View MSA
122049376 5273 Angiosperm View MSA
121349071 5274 Embryophyte View MSA
123381151 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.229        
cufflinks 7.911        
cufflinks 0.023     Low Low
cufflinks 0.064     Low Low
cufflinks 0.117       Low
cufflinks 4.199        
cufflinks 1.065        
cufflinks 0.527        
cufflinks 0.747        
cufflinks 10.052        
cufflinks 8.152        
cufflinks 106.911     High High
cufflinks 29.786     High High
cufflinks 0.058     Low Low
cufflinks 18.175     High High
cufflinks 0.576        
cufflinks 5.431        
cufflinks 0.607        
cufflinks 0.179        
cufflinks 17.79     High High

0 Strain