Gene : Seita.2G435900 S. italica v2.2
Defline:  (1 of 2) PTHR11782//PTHR11782:SF48 - ADENOSINE/GUANOSINE DIPHOSPHATASE Genomic Order:  4359
Name:  ? Seita.2G435900 Secondary Identifier:  ? PAC:32723284
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7177 Setaria italica pathologic  
Sitalica PWY-7184 Setaria italica pathologic  
Sitalica PWY-7185 Setaria italica pathologic  
Sitalica PWY-7210 Setaria italica pathologic  
Sitalica PWY-7211 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G435900 0.5kb upstream 0.5kb upstream 4729 true scaffold_2: 48600804-48605532 Setaria italica
Seita.2G435900 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 48600804-48601303 Setaria italica
Seita.2G435900 0.5kb downstream 0.5kb downstream 4729 true scaffold_2: 48601304-48606032 Setaria italica
Seita.2G435900 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 48605533-48606032 Setaria italica
Seita.2G435900 1.0kb upstream 1.0kb upstream 5229 true scaffold_2: 48600304-48605532 Setaria italica
Seita.2G435900 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 48600304-48601303 Setaria italica
Seita.2G435900 1.0kb downstream 1.0kb downstream 5229 true scaffold_2: 48601304-48606532 Setaria italica
Seita.2G435900 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 48605533-48606532 Setaria italica
Seita.2G435900 2.0kb upstream 2.0kb upstream 6229 true scaffold_2: 48599304-48605532 Setaria italica
Seita.2G435900 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 48599304-48601303 Setaria italica
Seita.2G435900 2.0kb downstream 2.0kb downstream 6229 true scaffold_2: 48601304-48607532 Setaria italica
Seita.2G435900 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 48605533-48607532 Setaria italica
Seita.2G435900 5.0kb upstream 5.0kb upstream 9229 true scaffold_2: 48596304-48605532 Setaria italica
Seita.2G435900 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 48596304-48601303 Setaria italica
Seita.2G435900 5.0kb downstream 5.0kb downstream 9229 true scaffold_2: 48601304-48610532 Setaria italica
Seita.2G435900 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 48605533-48610532 Setaria italica
Seita.2G435900 10.0kb upstream 10.0kb upstream 14229 true scaffold_2: 48591304-48605532 Setaria italica
Seita.2G435900 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 48591304-48601303 Setaria italica
Seita.2G435900 10.0kb downstream 10.0kb downstream 14229 true scaffold_2: 48601304-48615532 Setaria italica
Seita.2G435900 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 48605533-48615532 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180180 5267 Panicoideae View MSA
124569171 5269 Grass View MSA
122045762 5273 Angiosperm View MSA
121344433 5274 Embryophyte View MSA
123426317 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.819     High  
cufflinks 16.075     High  
cufflinks 4.488       Low
cufflinks 3.644       Low
cufflinks 5.225       Low
cufflinks 17.842     High  
cufflinks 12.313        
cufflinks 10.702        
cufflinks 9.38        
cufflinks 16.944     High  
cufflinks 20.235     High  
cufflinks 22.472     High High
cufflinks 14.249     High  
cufflinks 10.731        
cufflinks 28.413     High High
cufflinks 6.182       Low
cufflinks 20.97     High  
cufflinks 8.883        
cufflinks 6.765        
cufflinks 25.796     High High

0 Strain