Gene : Seita.2G438100 S. italica v2.2
Defline:  (1 of 1) PTHR10682:SF20 - POLY(A) POLYMERASE Genomic Order:  4381
Name:  ? Seita.2G438100 Secondary Identifier:  ? PAC:32721011
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G438100 0.5kb upstream 0.5kb upstream 6177 true scaffold_2: 48767814-48773990 Setaria italica
Seita.2G438100 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 48773491-48773990 Setaria italica
Seita.2G438100 0.5kb downstream 0.5kb downstream 6177 true scaffold_2: 48767314-48773490 Setaria italica
Seita.2G438100 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 48767314-48767813 Setaria italica
Seita.2G438100 1.0kb upstream 1.0kb upstream 6677 true scaffold_2: 48767814-48774490 Setaria italica
Seita.2G438100 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 48773491-48774490 Setaria italica
Seita.2G438100 1.0kb downstream 1.0kb downstream 6677 true scaffold_2: 48766814-48773490 Setaria italica
Seita.2G438100 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 48766814-48767813 Setaria italica
Seita.2G438100 2.0kb upstream 2.0kb upstream 7677 true scaffold_2: 48767814-48775490 Setaria italica
Seita.2G438100 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 48773491-48775490 Setaria italica
Seita.2G438100 2.0kb downstream 2.0kb downstream 7677 true scaffold_2: 48765814-48773490 Setaria italica
Seita.2G438100 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 48765814-48767813 Setaria italica
Seita.2G438100 5.0kb upstream 5.0kb upstream 10677 true scaffold_2: 48767814-48778490 Setaria italica
Seita.2G438100 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 48773491-48778490 Setaria italica
Seita.2G438100 5.0kb downstream 5.0kb downstream 10677 true scaffold_2: 48762814-48773490 Setaria italica
Seita.2G438100 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 48762814-48767813 Setaria italica
Seita.2G438100 10.0kb upstream 10.0kb upstream 15677 true scaffold_2: 48767814-48783490 Setaria italica
Seita.2G438100 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 48773491-48783490 Setaria italica
Seita.2G438100 10.0kb downstream 10.0kb downstream 15677 true scaffold_2: 48757814-48773490 Setaria italica
Seita.2G438100 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 48757814-48767813 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027667 5273 Angiosperm View MSA
122196640 5267 Panicoideae View MSA
124576184 5269 Grass View MSA
123429108 5275 Viridiplantae View MSA
121351142 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.112     Low Low
cufflinks 0.271        
cufflinks 0.951       High
cufflinks 0.789        
cufflinks 0.513        
cufflinks 0.385        
cufflinks 0.062     Low Low
cufflinks 0.28        
cufflinks 0.32        
cufflinks 0.696        
cufflinks 0.345        
cufflinks 1.199       High
cufflinks 0.123     Low Low
cufflinks 0.556        
cufflinks 0.239        
cufflinks 0.046     Low Low
cufflinks 0.717        
cufflinks 0.38        
cufflinks 1.145       High
cufflinks 0.523        

0 Strain