Gene : Seita.2G439000 S. italica v2.2
Defline:  (1 of 1) PTHR22778//PTHR22778:SF22 - OVARIAN CANCER GENE-2 PROTEIN-RELATED Genomic Order:  4390
Name:  ? Seita.2G439000 Secondary Identifier:  ? PAC:32719419
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G439000 0.5kb upstream 0.5kb upstream 4790 true scaffold_2: 48814451-48819240 Setaria italica
Seita.2G439000 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 48814451-48814950 Setaria italica
Seita.2G439000 0.5kb downstream 0.5kb downstream 4790 true scaffold_2: 48814951-48819740 Setaria italica
Seita.2G439000 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 48819241-48819740 Setaria italica
Seita.2G439000 1.0kb upstream 1.0kb upstream 5290 true scaffold_2: 48813951-48819240 Setaria italica
Seita.2G439000 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 48813951-48814950 Setaria italica
Seita.2G439000 1.0kb downstream 1.0kb downstream 5290 true scaffold_2: 48814951-48820240 Setaria italica
Seita.2G439000 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 48819241-48820240 Setaria italica
Seita.2G439000 2.0kb upstream 2.0kb upstream 6290 true scaffold_2: 48812951-48819240 Setaria italica
Seita.2G439000 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 48812951-48814950 Setaria italica
Seita.2G439000 2.0kb downstream 2.0kb downstream 6290 true scaffold_2: 48814951-48821240 Setaria italica
Seita.2G439000 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 48819241-48821240 Setaria italica
Seita.2G439000 5.0kb upstream 5.0kb upstream 9290 true scaffold_2: 48809951-48819240 Setaria italica
Seita.2G439000 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 48809951-48814950 Setaria italica
Seita.2G439000 5.0kb downstream 5.0kb downstream 9290 true scaffold_2: 48814951-48824240 Setaria italica
Seita.2G439000 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 48819241-48824240 Setaria italica
Seita.2G439000 10.0kb upstream 10.0kb upstream 14290 true scaffold_2: 48804951-48819240 Setaria italica
Seita.2G439000 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 48804951-48814950 Setaria italica
Seita.2G439000 10.0kb downstream 10.0kb downstream 14290 true scaffold_2: 48814951-48829240 Setaria italica
Seita.2G439000 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 48819241-48829240 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190965 5267 Panicoideae View MSA
124466123 5269 Grass View MSA
122048467 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121348869 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 59.936     High Low
cufflinks 96.618     High  
cufflinks 71.467     High  
cufflinks 69.443     High  
cufflinks 70.964     High  
cufflinks 92.679     High  
cufflinks 82.05     High  
cufflinks 69.774     High  
cufflinks 100.398     High  
cufflinks 74.819     High  
cufflinks 86.002     High  
cufflinks 81.78     High  
cufflinks 114.387     High High
cufflinks 75.829     High  
cufflinks 126.737     High High
cufflinks 52.918     High Low
cufflinks 94.558     High  
cufflinks 44.288     High Low
cufflinks 94.376     High  
cufflinks 133.753     High High

0 Strain