Gene : Seita.2G437000 S. italica v2.2
Defline:  (1 of 1) K14317 - nuclear pore complex protein Nup214 (NUP214, CAN) Genomic Order:  4370
Name:  ? Seita.2G437000 Secondary Identifier:  ? PAC:32719776
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G437000 0.5kb upstream 0.5kb upstream 12053 true scaffold_2: 48684342-48696394 Setaria italica
Seita.2G437000 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 48695895-48696394 Setaria italica
Seita.2G437000 0.5kb downstream 0.5kb downstream 12053 true scaffold_2: 48683842-48695894 Setaria italica
Seita.2G437000 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 48683842-48684341 Setaria italica
Seita.2G437000 1.0kb upstream 1.0kb upstream 12553 true scaffold_2: 48684342-48696894 Setaria italica
Seita.2G437000 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 48695895-48696894 Setaria italica
Seita.2G437000 1.0kb downstream 1.0kb downstream 12553 true scaffold_2: 48683342-48695894 Setaria italica
Seita.2G437000 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 48683342-48684341 Setaria italica
Seita.2G437000 2.0kb upstream 2.0kb upstream 13553 true scaffold_2: 48684342-48697894 Setaria italica
Seita.2G437000 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 48695895-48697894 Setaria italica
Seita.2G437000 2.0kb downstream 2.0kb downstream 13553 true scaffold_2: 48682342-48695894 Setaria italica
Seita.2G437000 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 48682342-48684341 Setaria italica
Seita.2G437000 5.0kb upstream 5.0kb upstream 16553 true scaffold_2: 48684342-48700894 Setaria italica
Seita.2G437000 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 48695895-48700894 Setaria italica
Seita.2G437000 5.0kb downstream 5.0kb downstream 16553 true scaffold_2: 48679342-48695894 Setaria italica
Seita.2G437000 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 48679342-48684341 Setaria italica
Seita.2G437000 10.0kb upstream 10.0kb upstream 21553 true scaffold_2: 48684342-48705894 Setaria italica
Seita.2G437000 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 48695895-48705894 Setaria italica
Seita.2G437000 10.0kb downstream 10.0kb downstream 21553 true scaffold_2: 48674342-48695894 Setaria italica
Seita.2G437000 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 48674342-48684341 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185966 5267 Panicoideae View MSA
124581571 5269 Grass View MSA
122042091 5273 Angiosperm View MSA
121347011 5274 Embryophyte View MSA
123424066 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.689       High
cufflinks 3.425       High
cufflinks 2.042        
cufflinks 1.41       Low
cufflinks 1.598       Low
cufflinks 3.251       High
cufflinks 3.011        
cufflinks 1.625       Low
cufflinks 1.963        
cufflinks 1.779        
cufflinks 3.102        
cufflinks 1.948        
cufflinks 2.29        
cufflinks 2.256        
cufflinks 3.105        
cufflinks 2.981        
cufflinks 1.712        
cufflinks 3.294       High
cufflinks 1.329       Low
cufflinks 2.229        

0 Strain