Gene : Seita.2G437100 S. italica v2.2
Defline:  (1 of 1) PTHR10992:SF217 - HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN Genomic Order:  4371
Name:  ? Seita.2G437100 Secondary Identifier:  ? PAC:32721656
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica LIPAS-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G437100 0.5kb upstream 0.5kb upstream 2289 true scaffold_2: 48699127-48701415 Setaria italica
Seita.2G437100 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 48699127-48699626 Setaria italica
Seita.2G437100 0.5kb downstream 0.5kb downstream 2289 true scaffold_2: 48699627-48701915 Setaria italica
Seita.2G437100 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 48701416-48701915 Setaria italica
Seita.2G437100 1.0kb upstream 1.0kb upstream 2789 true scaffold_2: 48698627-48701415 Setaria italica
Seita.2G437100 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 48698627-48699626 Setaria italica
Seita.2G437100 1.0kb downstream 1.0kb downstream 2789 true scaffold_2: 48699627-48702415 Setaria italica
Seita.2G437100 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 48701416-48702415 Setaria italica
Seita.2G437100 2.0kb upstream 2.0kb upstream 3789 true scaffold_2: 48697627-48701415 Setaria italica
Seita.2G437100 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 48697627-48699626 Setaria italica
Seita.2G437100 2.0kb downstream 2.0kb downstream 3789 true scaffold_2: 48699627-48703415 Setaria italica
Seita.2G437100 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 48701416-48703415 Setaria italica
Seita.2G437100 5.0kb upstream 5.0kb upstream 6789 true scaffold_2: 48694627-48701415 Setaria italica
Seita.2G437100 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 48694627-48699626 Setaria italica
Seita.2G437100 5.0kb downstream 5.0kb downstream 6789 true scaffold_2: 48699627-48706415 Setaria italica
Seita.2G437100 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 48701416-48706415 Setaria italica
Seita.2G437100 10.0kb upstream 10.0kb upstream 11789 true scaffold_2: 48689627-48701415 Setaria italica
Seita.2G437100 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 48689627-48699626 Setaria italica
Seita.2G437100 10.0kb downstream 10.0kb downstream 11789 true scaffold_2: 48699627-48711415 Setaria italica
Seita.2G437100 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 48701416-48711415 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188416 5267 Panicoideae View MSA
124575125 5269 Grass View MSA
122045603 5273 Angiosperm View MSA
121349939 5274 Embryophyte View MSA
123428460 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.04        
cufflinks 3.431        
cufflinks 5.347        
cufflinks 9.957        
cufflinks 12.642     High High
cufflinks 3.119        
cufflinks 7.682        
cufflinks 9.13        
cufflinks 9.448        
cufflinks 1.151        
cufflinks 1.094        
cufflinks 0.141       Low
cufflinks 0.374        
cufflinks 5.94        
cufflinks 0.089     Low Low
cufflinks 14.678     High High
cufflinks 0.067     Low Low
cufflinks 3.442        
cufflinks 10.679        
cufflinks 0.076     Low Low

0 Strain