Gene : Seita.2G445100 S. italica v2.2
Defline:  (1 of 4) PTHR23198:SF4 - NUCLEOPORIN AUTOPEPTIDASE Genomic Order:  4451
Name:  ? Seita.2G445100 Secondary Identifier:  ? PAC:32723552
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G445100 0.5kb upstream 0.5kb upstream 2123 true scaffold_2: 49170948-49173070 Setaria italica
Seita.2G445100 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 49170948-49171447 Setaria italica
Seita.2G445100 0.5kb downstream 0.5kb downstream 2123 true scaffold_2: 49171448-49173570 Setaria italica
Seita.2G445100 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 49173071-49173570 Setaria italica
Seita.2G445100 1.0kb upstream 1.0kb upstream 2623 true scaffold_2: 49170448-49173070 Setaria italica
Seita.2G445100 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 49170448-49171447 Setaria italica
Seita.2G445100 1.0kb downstream 1.0kb downstream 2623 true scaffold_2: 49171448-49174070 Setaria italica
Seita.2G445100 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 49173071-49174070 Setaria italica
Seita.2G445100 2.0kb upstream 2.0kb upstream 3623 true scaffold_2: 49169448-49173070 Setaria italica
Seita.2G445100 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 49169448-49171447 Setaria italica
Seita.2G445100 2.0kb downstream 2.0kb downstream 3623 true scaffold_2: 49171448-49175070 Setaria italica
Seita.2G445100 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 49173071-49175070 Setaria italica
Seita.2G445100 5.0kb upstream 5.0kb upstream 6623 true scaffold_2: 49166448-49173070 Setaria italica
Seita.2G445100 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 49166448-49171447 Setaria italica
Seita.2G445100 5.0kb downstream 5.0kb downstream 6623 true scaffold_2: 49171448-49178070 Setaria italica
Seita.2G445100 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 49173071-49178070 Setaria italica
Seita.2G445100 10.0kb upstream 10.0kb upstream 11623 true scaffold_2: 49161448-49173070 Setaria italica
Seita.2G445100 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 49161448-49171447 Setaria italica
Seita.2G445100 10.0kb downstream 10.0kb downstream 11623 true scaffold_2: 49171448-49183070 Setaria italica
Seita.2G445100 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 49173071-49183070 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122053116 5267 Panicoideae Singleton cluster - no MSA
124353004 5269 Grass Singleton cluster - no MSA
122041710 5273 Angiosperm View MSA
121349617 5274 Embryophyte View MSA
123427472 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.056     High High
cufflinks 25.029     High High
cufflinks 9.33        
cufflinks 7.776        
cufflinks 8.265        
cufflinks 20.554     High High
cufflinks 18.399     High High
cufflinks 7.013       Low
cufflinks 8.51        
cufflinks 7.847        
cufflinks 18.095     High  
cufflinks 6.429       Low
cufflinks 11.722        
cufflinks 8.958        
cufflinks 17.574     High  
cufflinks 16.742     High  
cufflinks 5.974       Low
cufflinks 18.322     High  
cufflinks 7.126        
cufflinks 8.835        

0 Strain