Gene : Seita.3G001100 S. italica v2.2
Defline:  (1 of 1) PTHR12383//PTHR12383:SF18 - PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED Genomic Order:  11
Name:  ? Seita.3G001100 Secondary Identifier:  ? PAC:32710848
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G001100 0.5kb upstream 0.5kb upstream 2873 true scaffold_3: 38617-41489 Setaria italica
Seita.3G001100 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 40990-41489 Setaria italica
Seita.3G001100 0.5kb downstream 0.5kb downstream 2873 true scaffold_3: 38117-40989 Setaria italica
Seita.3G001100 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 38117-38616 Setaria italica
Seita.3G001100 1.0kb upstream 1.0kb upstream 3373 true scaffold_3: 38617-41989 Setaria italica
Seita.3G001100 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 40990-41989 Setaria italica
Seita.3G001100 1.0kb downstream 1.0kb downstream 3373 true scaffold_3: 37617-40989 Setaria italica
Seita.3G001100 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 37617-38616 Setaria italica
Seita.3G001100 2.0kb upstream 2.0kb upstream 4373 true scaffold_3: 38617-42989 Setaria italica
Seita.3G001100 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 40990-42989 Setaria italica
Seita.3G001100 2.0kb downstream 2.0kb downstream 4373 true scaffold_3: 36617-40989 Setaria italica
Seita.3G001100 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 36617-38616 Setaria italica
Seita.3G001100 5.0kb upstream 5.0kb upstream 7373 true scaffold_3: 38617-45989 Setaria italica
Seita.3G001100 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 40990-45989 Setaria italica
Seita.3G001100 5.0kb downstream 5.0kb downstream 7373 true scaffold_3: 33617-40989 Setaria italica
Seita.3G001100 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 33617-38616 Setaria italica
Seita.3G001100 10.0kb upstream 10.0kb upstream 12373 true scaffold_3: 38617-50989 Setaria italica
Seita.3G001100 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 40990-50989 Setaria italica
Seita.3G001100 10.0kb downstream 10.0kb downstream 12373 true scaffold_3: 28617-40989 Setaria italica
Seita.3G001100 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 28617-38616 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185603 5267 Panicoideae View MSA
124583441 5269 Grass View MSA
122044516 5273 Angiosperm View MSA
123428894 5275 Viridiplantae View MSA
121348818 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.809        
cufflinks 3.056        
cufflinks 0.961       Low
cufflinks 1.213       Low
cufflinks 1.205       Low
cufflinks 2.943        
cufflinks 1.668        
cufflinks 1.826        
cufflinks 1.569        
cufflinks 3.812        
cufflinks 2.778        
cufflinks 5.537       High
cufflinks 2.614        
cufflinks 1.301       Low
cufflinks 2.501        
cufflinks 2.282        
cufflinks 3.274        
cufflinks 6.276       High
cufflinks 1.189       Low
cufflinks 2.768        

0 Strain