Gene : Seita.3G001300 S. italica v2.2
Defline:  (1 of 1) PTHR10799//PTHR10799:SF726 - SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED Genomic Order:  13
Name:  ? Seita.3G001300 Secondary Identifier:  ? PAC:32711125
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G001300 0.5kb upstream 0.5kb upstream 8117 true scaffold_3: 43402-51518 Setaria italica
Seita.3G001300 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 43402-43901 Setaria italica
Seita.3G001300 0.5kb downstream 0.5kb downstream 8117 true scaffold_3: 43902-52018 Setaria italica
Seita.3G001300 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 51519-52018 Setaria italica
Seita.3G001300 1.0kb upstream 1.0kb upstream 8617 true scaffold_3: 42902-51518 Setaria italica
Seita.3G001300 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 42902-43901 Setaria italica
Seita.3G001300 1.0kb downstream 1.0kb downstream 8617 true scaffold_3: 43902-52518 Setaria italica
Seita.3G001300 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 51519-52518 Setaria italica
Seita.3G001300 2.0kb upstream 2.0kb upstream 9617 true scaffold_3: 41902-51518 Setaria italica
Seita.3G001300 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 41902-43901 Setaria italica
Seita.3G001300 2.0kb downstream 2.0kb downstream 9617 true scaffold_3: 43902-53518 Setaria italica
Seita.3G001300 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 51519-53518 Setaria italica
Seita.3G001300 5.0kb upstream 5.0kb upstream 12617 true scaffold_3: 38902-51518 Setaria italica
Seita.3G001300 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 38902-43901 Setaria italica
Seita.3G001300 5.0kb downstream 5.0kb downstream 12617 true scaffold_3: 43902-56518 Setaria italica
Seita.3G001300 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 51519-56518 Setaria italica
Seita.3G001300 10.0kb upstream 10.0kb upstream 17617 true scaffold_3: 33902-51518 Setaria italica
Seita.3G001300 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 33902-43901 Setaria italica
Seita.3G001300 10.0kb downstream 10.0kb downstream 17617 true scaffold_3: 43902-61518 Setaria italica
Seita.3G001300 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 51519-61518 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186823 5267 Panicoideae View MSA
124577495 5269 Grass View MSA
122047710 5273 Angiosperm View MSA
121346299 5274 Embryophyte View MSA
123428510 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.87       High
cufflinks 9.207       High
cufflinks 2.953       Low
cufflinks 2.03       Low
cufflinks 2.054       Low
cufflinks 8.95       High
cufflinks 5.085        
cufflinks 5.438        
cufflinks 4.692        
cufflinks 3.784        
cufflinks 8.04       High
cufflinks 5.591        
cufflinks 4.007        
cufflinks 3.809        
cufflinks 7.076        
cufflinks 4.026        
cufflinks 5.69        
cufflinks 5.612        
cufflinks 2.72       Low
cufflinks 5.932        

0 Strain