Gene : Seita.3G002600 S. italica v2.2
Defline:  (1 of 3) PTHR10744:SF7 - 30S RIBOSOMAL PROTEIN S17, CHLOROPLASTIC Genomic Order:  26
Name:  ? Seita.3G002600 Secondary Identifier:  ? PAC:32713019
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G002600 0.5kb upstream 0.5kb upstream 1112 true scaffold_3: 110400-111511 Setaria italica
Seita.3G002600 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 111012-111511 Setaria italica
Seita.3G002600 0.5kb downstream 0.5kb downstream 1112 true scaffold_3: 109900-111011 Setaria italica
Seita.3G002600 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 109900-110399 Setaria italica
Seita.3G002600 1.0kb upstream 1.0kb upstream 1612 true scaffold_3: 110400-112011 Setaria italica
Seita.3G002600 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 111012-112011 Setaria italica
Seita.3G002600 1.0kb downstream 1.0kb downstream 1612 true scaffold_3: 109400-111011 Setaria italica
Seita.3G002600 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 109400-110399 Setaria italica
Seita.3G002600 2.0kb upstream 2.0kb upstream 2612 true scaffold_3: 110400-113011 Setaria italica
Seita.3G002600 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 111012-113011 Setaria italica
Seita.3G002600 2.0kb downstream 2.0kb downstream 2612 true scaffold_3: 108400-111011 Setaria italica
Seita.3G002600 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 108400-110399 Setaria italica
Seita.3G002600 5.0kb upstream 5.0kb upstream 5612 true scaffold_3: 110400-116011 Setaria italica
Seita.3G002600 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 111012-116011 Setaria italica
Seita.3G002600 5.0kb downstream 5.0kb downstream 5612 true scaffold_3: 105400-111011 Setaria italica
Seita.3G002600 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 105400-110399 Setaria italica
Seita.3G002600 10.0kb upstream 10.0kb upstream 10612 true scaffold_3: 110400-121011 Setaria italica
Seita.3G002600 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 111012-121011 Setaria italica
Seita.3G002600 10.0kb downstream 10.0kb downstream 10612 true scaffold_3: 100400-111011 Setaria italica
Seita.3G002600 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 100400-110399 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190947 5267 Panicoideae View MSA
124580924 5269 Grass View MSA
122045320 5273 Angiosperm View MSA
121347348 5274 Embryophyte View MSA
123424165 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.528        
cufflinks 1.149        
cufflinks 0.311       Low
cufflinks 0.704        
cufflinks 0.808        
cufflinks 1.442        
cufflinks 1.515        
cufflinks 1.661        
cufflinks 1.602        
cufflinks 12.74       High
cufflinks 0.99        
cufflinks 0.703        
cufflinks 0.708        
cufflinks 1.401        
cufflinks 0.637        
cufflinks 1.082        
cufflinks 0.83        
cufflinks 0.453       Low
cufflinks 0.433       Low
cufflinks 1.279        

0 Strain