Gene : Seita.3G011900 S. italica v2.2
Defline:  (1 of 3) PTHR10774//PTHR10774:SF58 - EXTENDED SYNAPTOTAGMIN-RELATED Genomic Order:  119
Name:  ? Seita.3G011900 Secondary Identifier:  ? PAC:32710461
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G011900 0.5kb upstream 0.5kb upstream 2443 true scaffold_3: 637713-640155 Setaria italica
Seita.3G011900 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 639656-640155 Setaria italica
Seita.3G011900 0.5kb downstream 0.5kb downstream 2443 true scaffold_3: 637213-639655 Setaria italica
Seita.3G011900 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 637213-637712 Setaria italica
Seita.3G011900 1.0kb upstream 1.0kb upstream 2943 true scaffold_3: 637713-640655 Setaria italica
Seita.3G011900 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 639656-640655 Setaria italica
Seita.3G011900 1.0kb downstream 1.0kb downstream 2943 true scaffold_3: 636713-639655 Setaria italica
Seita.3G011900 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 636713-637712 Setaria italica
Seita.3G011900 2.0kb upstream 2.0kb upstream 3943 true scaffold_3: 637713-641655 Setaria italica
Seita.3G011900 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 639656-641655 Setaria italica
Seita.3G011900 2.0kb downstream 2.0kb downstream 3943 true scaffold_3: 635713-639655 Setaria italica
Seita.3G011900 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 635713-637712 Setaria italica
Seita.3G011900 5.0kb upstream 5.0kb upstream 6943 true scaffold_3: 637713-644655 Setaria italica
Seita.3G011900 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 639656-644655 Setaria italica
Seita.3G011900 5.0kb downstream 5.0kb downstream 6943 true scaffold_3: 632713-639655 Setaria italica
Seita.3G011900 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 632713-637712 Setaria italica
Seita.3G011900 10.0kb upstream 10.0kb upstream 11943 true scaffold_3: 637713-649655 Setaria italica
Seita.3G011900 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 639656-649655 Setaria italica
Seita.3G011900 10.0kb downstream 10.0kb downstream 11943 true scaffold_3: 627713-639655 Setaria italica
Seita.3G011900 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 627713-637712 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188559 5267 Panicoideae View MSA
124568421 5269 Grass View MSA
122043310 5273 Angiosperm View MSA
121351694 5274 Embryophyte View MSA
123426112 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.245        
cufflinks 11.386        
cufflinks 1.407       Low
cufflinks 1.015       Low
cufflinks 1.068       Low
cufflinks 10.244        
cufflinks 5.722        
cufflinks 3.701        
cufflinks 3.497        
cufflinks 19.165     High  
cufflinks 15.338     High  
cufflinks 13.783     High  
cufflinks 20.131     High High
cufflinks 2.254        
cufflinks 32.192     High High
cufflinks 2.015        
cufflinks 22.033     High High
cufflinks 1.078       Low
cufflinks 1.545       Low
cufflinks 23.876     High High

0 Strain