Gene : Seita.3G012400 S. italica v2.2
Defline:  (1 of 5) 6.1.1.9 - Valine--tRNA ligase / Valyl-tRNA synthetase Genomic Order:  124
Name:  ? Seita.3G012400 Secondary Identifier:  ? PAC:32714724
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica TRNA-CHARGING-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G012400 0.5kb upstream 0.5kb upstream 9086 true scaffold_3: 654581-663666 Setaria italica
Seita.3G012400 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 654581-655080 Setaria italica
Seita.3G012400 0.5kb downstream 0.5kb downstream 9086 true scaffold_3: 655081-664166 Setaria italica
Seita.3G012400 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 663667-664166 Setaria italica
Seita.3G012400 1.0kb upstream 1.0kb upstream 9586 true scaffold_3: 654081-663666 Setaria italica
Seita.3G012400 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 654081-655080 Setaria italica
Seita.3G012400 1.0kb downstream 1.0kb downstream 9586 true scaffold_3: 655081-664666 Setaria italica
Seita.3G012400 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 663667-664666 Setaria italica
Seita.3G012400 2.0kb upstream 2.0kb upstream 10586 true scaffold_3: 653081-663666 Setaria italica
Seita.3G012400 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 653081-655080 Setaria italica
Seita.3G012400 2.0kb downstream 2.0kb downstream 10586 true scaffold_3: 655081-665666 Setaria italica
Seita.3G012400 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 663667-665666 Setaria italica
Seita.3G012400 5.0kb upstream 5.0kb upstream 13586 true scaffold_3: 650081-663666 Setaria italica
Seita.3G012400 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 650081-655080 Setaria italica
Seita.3G012400 5.0kb downstream 5.0kb downstream 13586 true scaffold_3: 655081-668666 Setaria italica
Seita.3G012400 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 663667-668666 Setaria italica
Seita.3G012400 10.0kb upstream 10.0kb upstream 18586 true scaffold_3: 645081-663666 Setaria italica
Seita.3G012400 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 645081-655080 Setaria italica
Seita.3G012400 10.0kb downstream 10.0kb downstream 18586 true scaffold_3: 655081-673666 Setaria italica
Seita.3G012400 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 663667-673666 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191584 5267 Panicoideae View MSA
124590006 5269 Grass View MSA
122045228 5273 Angiosperm View MSA
121348805 5274 Embryophyte View MSA
123424302 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.41     High  
cufflinks 32.73     High  
cufflinks 33.213     High  
cufflinks 23.846     High  
cufflinks 24.56     High  
cufflinks 29.23     High  
cufflinks 28.827     High  
cufflinks 32.463     High  
cufflinks 35.252     High High
cufflinks 32.663     High  
cufflinks 34.775     High High
cufflinks 25.201     High  
cufflinks 18.673     High Low
cufflinks 31.349     High  
cufflinks 33.952     High High
cufflinks 24.83     High  
cufflinks 28.23     High  
cufflinks 18.813     High Low
cufflinks 22.185     High Low
cufflinks 30.236     High  

0 Strain