Gene : Seita.3G012800 S. italica v2.2
Defline:  (1 of 2) PTHR12385//PTHR12385:SF47 - CTL TRANSPORTER Genomic Order:  128
Name:  ? Seita.3G012800 Secondary Identifier:  ? PAC:32713293
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G012800 0.5kb upstream 0.5kb upstream 5605 true scaffold_3: 674206-679810 Setaria italica
Seita.3G012800 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 674206-674705 Setaria italica
Seita.3G012800 0.5kb downstream 0.5kb downstream 5605 true scaffold_3: 674706-680310 Setaria italica
Seita.3G012800 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 679811-680310 Setaria italica
Seita.3G012800 1.0kb upstream 1.0kb upstream 6105 true scaffold_3: 673706-679810 Setaria italica
Seita.3G012800 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 673706-674705 Setaria italica
Seita.3G012800 1.0kb downstream 1.0kb downstream 6105 true scaffold_3: 674706-680810 Setaria italica
Seita.3G012800 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 679811-680810 Setaria italica
Seita.3G012800 2.0kb upstream 2.0kb upstream 7105 true scaffold_3: 672706-679810 Setaria italica
Seita.3G012800 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 672706-674705 Setaria italica
Seita.3G012800 2.0kb downstream 2.0kb downstream 7105 true scaffold_3: 674706-681810 Setaria italica
Seita.3G012800 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 679811-681810 Setaria italica
Seita.3G012800 5.0kb upstream 5.0kb upstream 10105 true scaffold_3: 669706-679810 Setaria italica
Seita.3G012800 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 669706-674705 Setaria italica
Seita.3G012800 5.0kb downstream 5.0kb downstream 10105 true scaffold_3: 674706-684810 Setaria italica
Seita.3G012800 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 679811-684810 Setaria italica
Seita.3G012800 10.0kb upstream 10.0kb upstream 15105 true scaffold_3: 664706-679810 Setaria italica
Seita.3G012800 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 664706-674705 Setaria italica
Seita.3G012800 10.0kb downstream 10.0kb downstream 15105 true scaffold_3: 674706-689810 Setaria italica
Seita.3G012800 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 679811-689810 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183497 5267 Panicoideae View MSA
124586558 5269 Grass View MSA
122045224 5273 Angiosperm View MSA
121347248 5274 Embryophyte View MSA
123428295 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.325     High  
cufflinks 29.915     High High
cufflinks 1.39       Low
cufflinks 0.769       Low
cufflinks 0.781       Low
cufflinks 30.089     High High
cufflinks 11.249        
cufflinks 9.262        
cufflinks 7.524        
cufflinks 13.933        
cufflinks 20.413     High  
cufflinks 10.052        
cufflinks 6.607        
cufflinks 1.957        
cufflinks 17.8     High  
cufflinks 4.441        
cufflinks 12.271        
cufflinks 2.252        
cufflinks 0.657       Low
cufflinks 14.909     High  

0 Strain