Gene : Seita.3G017000 S. italica v2.2
Defline:  (1 of 1) PTHR13872:SF23 - DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT STT3B Genomic Order:  170
Name:  ? Seita.3G017000 Secondary Identifier:  ? PAC:32714380
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G017000 0.5kb upstream 0.5kb upstream 5367 true scaffold_3: 922895-928261 Setaria italica
Seita.3G017000 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 922895-923394 Setaria italica
Seita.3G017000 0.5kb downstream 0.5kb downstream 5367 true scaffold_3: 923395-928761 Setaria italica
Seita.3G017000 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 928262-928761 Setaria italica
Seita.3G017000 1.0kb upstream 1.0kb upstream 5867 true scaffold_3: 922395-928261 Setaria italica
Seita.3G017000 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 922395-923394 Setaria italica
Seita.3G017000 1.0kb downstream 1.0kb downstream 5867 true scaffold_3: 923395-929261 Setaria italica
Seita.3G017000 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 928262-929261 Setaria italica
Seita.3G017000 2.0kb upstream 2.0kb upstream 6867 true scaffold_3: 921395-928261 Setaria italica
Seita.3G017000 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 921395-923394 Setaria italica
Seita.3G017000 2.0kb downstream 2.0kb downstream 6867 true scaffold_3: 923395-930261 Setaria italica
Seita.3G017000 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 928262-930261 Setaria italica
Seita.3G017000 5.0kb upstream 5.0kb upstream 9867 true scaffold_3: 918395-928261 Setaria italica
Seita.3G017000 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 918395-923394 Setaria italica
Seita.3G017000 5.0kb downstream 5.0kb downstream 9867 true scaffold_3: 923395-933261 Setaria italica
Seita.3G017000 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 928262-933261 Setaria italica
Seita.3G017000 10.0kb upstream 10.0kb upstream 14867 true scaffold_3: 913395-928261 Setaria italica
Seita.3G017000 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 913395-923394 Setaria italica
Seita.3G017000 10.0kb downstream 10.0kb downstream 14867 true scaffold_3: 923395-938261 Setaria italica
Seita.3G017000 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 928262-938261 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194713 5267 Panicoideae View MSA
124575756 5269 Grass View MSA
122045472 5273 Angiosperm View MSA
121344925 5274 Embryophyte View MSA
123425256 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.89     High  
cufflinks 35.123     High High
cufflinks 19.557     High  
cufflinks 14.138     High Low
cufflinks 11.397     High Low
cufflinks 32.42     High High
cufflinks 22.063     High  
cufflinks 24.334     High  
cufflinks 18.396     High  
cufflinks 19.072     High  
cufflinks 31.479     High  
cufflinks 26.904     High  
cufflinks 17.271     High  
cufflinks 17.582     High  
cufflinks 34.668     High High
cufflinks 15.225     High Low
cufflinks 33.394     High High
cufflinks 18.672     High  
cufflinks 14.365     High Low
cufflinks 35.366     High High

0 Strain