Gene : Seita.3G016800 S. italica v2.2
Defline:  (1 of 1) PTHR33925:SF2 - PLASTID DIVISION PROTEIN CDP1, CHLOROPLASTIC Genomic Order:  168
Name:  ? Seita.3G016800 Secondary Identifier:  ? PAC:32711342
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G016800 0.5kb upstream 0.5kb upstream 5525 true scaffold_3: 914600-920124 Setaria italica
Seita.3G016800 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 914600-915099 Setaria italica
Seita.3G016800 0.5kb downstream 0.5kb downstream 5525 true scaffold_3: 915100-920624 Setaria italica
Seita.3G016800 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 920125-920624 Setaria italica
Seita.3G016800 1.0kb upstream 1.0kb upstream 6025 true scaffold_3: 914100-920124 Setaria italica
Seita.3G016800 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 914100-915099 Setaria italica
Seita.3G016800 1.0kb downstream 1.0kb downstream 6025 true scaffold_3: 915100-921124 Setaria italica
Seita.3G016800 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 920125-921124 Setaria italica
Seita.3G016800 2.0kb upstream 2.0kb upstream 7025 true scaffold_3: 913100-920124 Setaria italica
Seita.3G016800 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 913100-915099 Setaria italica
Seita.3G016800 2.0kb downstream 2.0kb downstream 7025 true scaffold_3: 915100-922124 Setaria italica
Seita.3G016800 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 920125-922124 Setaria italica
Seita.3G016800 5.0kb upstream 5.0kb upstream 10025 true scaffold_3: 910100-920124 Setaria italica
Seita.3G016800 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 910100-915099 Setaria italica
Seita.3G016800 5.0kb downstream 5.0kb downstream 10025 true scaffold_3: 915100-925124 Setaria italica
Seita.3G016800 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 920125-925124 Setaria italica
Seita.3G016800 10.0kb upstream 10.0kb upstream 15025 true scaffold_3: 905100-920124 Setaria italica
Seita.3G016800 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 905100-915099 Setaria italica
Seita.3G016800 10.0kb downstream 10.0kb downstream 15025 true scaffold_3: 915100-930124 Setaria italica
Seita.3G016800 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 920125-930124 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195613 5267 Panicoideae View MSA
124581901 5269 Grass View MSA
122051144 5273 Angiosperm View MSA
121351206 5274 Embryophyte View MSA
123426631 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.322        
cufflinks 9.101       High
cufflinks 2.977       Low
cufflinks 2.683       Low
cufflinks 4.266        
cufflinks 8.99       High
cufflinks 7.587        
cufflinks 7.489        
cufflinks 8.574       High
cufflinks 5.524        
cufflinks 5.795        
cufflinks 5.305        
cufflinks 5.103        
cufflinks 3.841        
cufflinks 7.05        
cufflinks 5.075        
cufflinks 5.855        
cufflinks 3.426       Low
cufflinks 3.034       Low
cufflinks 6.26        

0 Strain