Gene : Seita.3G015100 S. italica v2.2
Defline:  (1 of 25) PF06749 - Protein of unknown function (DUF1218) (DUF1218) Genomic Order:  151
Name:  ? Seita.3G015100 Secondary Identifier:  ? PAC:32712268
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G015100 0.5kb upstream 0.5kb upstream 3169 true scaffold_3: 800370-803538 Setaria italica
Seita.3G015100 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 803039-803538 Setaria italica
Seita.3G015100 0.5kb downstream 0.5kb downstream 3169 true scaffold_3: 799870-803038 Setaria italica
Seita.3G015100 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 799870-800369 Setaria italica
Seita.3G015100 1.0kb upstream 1.0kb upstream 3669 true scaffold_3: 800370-804038 Setaria italica
Seita.3G015100 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 803039-804038 Setaria italica
Seita.3G015100 1.0kb downstream 1.0kb downstream 3669 true scaffold_3: 799370-803038 Setaria italica
Seita.3G015100 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 799370-800369 Setaria italica
Seita.3G015100 2.0kb upstream 2.0kb upstream 4669 true scaffold_3: 800370-805038 Setaria italica
Seita.3G015100 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 803039-805038 Setaria italica
Seita.3G015100 2.0kb downstream 2.0kb downstream 4669 true scaffold_3: 798370-803038 Setaria italica
Seita.3G015100 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 798370-800369 Setaria italica
Seita.3G015100 5.0kb upstream 5.0kb upstream 7669 true scaffold_3: 800370-808038 Setaria italica
Seita.3G015100 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 803039-808038 Setaria italica
Seita.3G015100 5.0kb downstream 5.0kb downstream 7669 true scaffold_3: 795370-803038 Setaria italica
Seita.3G015100 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 795370-800369 Setaria italica
Seita.3G015100 10.0kb upstream 10.0kb upstream 12669 true scaffold_3: 800370-813038 Setaria italica
Seita.3G015100 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 803039-813038 Setaria italica
Seita.3G015100 10.0kb downstream 10.0kb downstream 12669 true scaffold_3: 790370-803038 Setaria italica
Seita.3G015100 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 790370-800369 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026895 5273 Angiosperm View MSA
122184157 5267 Panicoideae View MSA
124577764 5269 Grass View MSA
121349405 5274 Embryophyte View MSA
123381298 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.803        
cufflinks 5.061        
cufflinks 0.916       Low
cufflinks 1.086       Low
cufflinks 2.311        
cufflinks 7.432        
cufflinks 4.967        
cufflinks 3.528        
cufflinks 3.371        
cufflinks 11.785       High
cufflinks 4.746        
cufflinks 7.575        
cufflinks 14.08     High High
cufflinks 2.449        
cufflinks 11.839       High
cufflinks 4.668        
cufflinks 10.405       High
cufflinks 3.932        
cufflinks 1.429       Low
cufflinks 12.172       High

0 Strain