Gene : Seita.3G018100 S. italica v2.2
Defline:  (1 of 1) KOG4020 - Protein DRE2, required for cell viability Genomic Order:  181
Name:  ? Seita.3G018100 Secondary Identifier:  ? PAC:32711758
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G018100 0.5kb upstream 0.5kb upstream 3565 true scaffold_3: 1011318-1014882 Setaria italica
Seita.3G018100 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 1014383-1014882 Setaria italica
Seita.3G018100 0.5kb downstream 0.5kb downstream 3565 true scaffold_3: 1010818-1014382 Setaria italica
Seita.3G018100 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 1010818-1011317 Setaria italica
Seita.3G018100 1.0kb upstream 1.0kb upstream 4065 true scaffold_3: 1011318-1015382 Setaria italica
Seita.3G018100 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 1014383-1015382 Setaria italica
Seita.3G018100 1.0kb downstream 1.0kb downstream 4065 true scaffold_3: 1010318-1014382 Setaria italica
Seita.3G018100 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 1010318-1011317 Setaria italica
Seita.3G018100 2.0kb upstream 2.0kb upstream 5065 true scaffold_3: 1011318-1016382 Setaria italica
Seita.3G018100 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 1014383-1016382 Setaria italica
Seita.3G018100 2.0kb downstream 2.0kb downstream 5065 true scaffold_3: 1009318-1014382 Setaria italica
Seita.3G018100 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 1009318-1011317 Setaria italica
Seita.3G018100 5.0kb upstream 5.0kb upstream 8065 true scaffold_3: 1011318-1019382 Setaria italica
Seita.3G018100 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 1014383-1019382 Setaria italica
Seita.3G018100 5.0kb downstream 5.0kb downstream 8065 true scaffold_3: 1006318-1014382 Setaria italica
Seita.3G018100 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 1006318-1011317 Setaria italica
Seita.3G018100 10.0kb upstream 10.0kb upstream 13065 true scaffold_3: 1011318-1024382 Setaria italica
Seita.3G018100 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 1014383-1024382 Setaria italica
Seita.3G018100 10.0kb downstream 10.0kb downstream 13065 true scaffold_3: 1001318-1014382 Setaria italica
Seita.3G018100 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 1001318-1011317 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183750 5267 Panicoideae View MSA
124586425 5269 Grass View MSA
122047099 5273 Angiosperm View MSA
121344266 5274 Embryophyte View MSA
123424470 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.608     High  
cufflinks 7.91        
cufflinks 6.861        
cufflinks 8.527        
cufflinks 7.635        
cufflinks 7.655        
cufflinks 7.107        
cufflinks 7.635        
cufflinks 5.626       Low
cufflinks 15.641     High  
cufflinks 9.322        
cufflinks 17.277     High  
cufflinks 11.564        
cufflinks 9.802        
cufflinks 12.873        
cufflinks 12.162     High  
cufflinks 13.941        
cufflinks 64.21     High High
cufflinks 10.845        
cufflinks 9.589        

0 Strain