Gene : Seita.3G017500 S. italica v2.2
Defline:  (1 of 1) PTHR23125:SF26 - gb def: Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21I16 (AT5g40470/K21I Genomic Order:  175
Name:  ? Seita.3G017500 Secondary Identifier:  ? PAC:32714107
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G017500 0.5kb upstream 0.5kb upstream 2597 true scaffold_3: 975914-978510 Setaria italica
Seita.3G017500 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 975914-976413 Setaria italica
Seita.3G017500 0.5kb downstream 0.5kb downstream 2597 true scaffold_3: 976414-979010 Setaria italica
Seita.3G017500 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 978511-979010 Setaria italica
Seita.3G017500 1.0kb upstream 1.0kb upstream 3097 true scaffold_3: 975414-978510 Setaria italica
Seita.3G017500 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 975414-976413 Setaria italica
Seita.3G017500 1.0kb downstream 1.0kb downstream 3097 true scaffold_3: 976414-979510 Setaria italica
Seita.3G017500 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 978511-979510 Setaria italica
Seita.3G017500 2.0kb upstream 2.0kb upstream 4097 true scaffold_3: 974414-978510 Setaria italica
Seita.3G017500 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 974414-976413 Setaria italica
Seita.3G017500 2.0kb downstream 2.0kb downstream 4097 true scaffold_3: 976414-980510 Setaria italica
Seita.3G017500 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 978511-980510 Setaria italica
Seita.3G017500 5.0kb upstream 5.0kb upstream 7097 true scaffold_3: 971414-978510 Setaria italica
Seita.3G017500 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 971414-976413 Setaria italica
Seita.3G017500 5.0kb downstream 5.0kb downstream 7097 true scaffold_3: 976414-983510 Setaria italica
Seita.3G017500 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 978511-983510 Setaria italica
Seita.3G017500 10.0kb upstream 10.0kb upstream 12097 true scaffold_3: 966414-978510 Setaria italica
Seita.3G017500 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 966414-976413 Setaria italica
Seita.3G017500 10.0kb downstream 10.0kb downstream 12097 true scaffold_3: 976414-988510 Setaria italica
Seita.3G017500 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 978511-988510 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188214 5267 Panicoideae View MSA
124571766 5269 Grass View MSA
122042802 5273 Angiosperm View MSA
121310027 5274 Embryophyte View MSA
123347630 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.038        
cufflinks 7.208       Low
cufflinks 14.281     High  
cufflinks 21.075     High High
cufflinks 17.348     High High
cufflinks 9.149        
cufflinks 12.492        
cufflinks 12.152        
cufflinks 8.736        
cufflinks 8.64        
cufflinks 4.931       Low
cufflinks 12.856        
cufflinks 15.842     High  
cufflinks 11.37        
cufflinks 7.055       Low
cufflinks 17.25     High  
cufflinks 9.575        
cufflinks 22.019     High High
cufflinks 19.353     High High
cufflinks 6.836       Low

0 Strain