Gene : Seita.2G397100 S. italica v2.2
Defline:  (1 of 2) PF16294 - RNSP1-SAP18 binding (RSB) motif (RSB_motif) Genomic Order:  3971
Name:  ? Seita.2G397100 Secondary Identifier:  ? PAC:32723020
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G397100 0.5kb upstream 0.5kb upstream 4495 true scaffold_2: 46148759-46153253 Setaria italica
Seita.2G397100 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 46152754-46153253 Setaria italica
Seita.2G397100 0.5kb downstream 0.5kb downstream 4495 true scaffold_2: 46148259-46152753 Setaria italica
Seita.2G397100 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 46148259-46148758 Setaria italica
Seita.2G397100 1.0kb upstream 1.0kb upstream 4995 true scaffold_2: 46148759-46153753 Setaria italica
Seita.2G397100 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 46152754-46153753 Setaria italica
Seita.2G397100 1.0kb downstream 1.0kb downstream 4995 true scaffold_2: 46147759-46152753 Setaria italica
Seita.2G397100 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 46147759-46148758 Setaria italica
Seita.2G397100 2.0kb upstream 2.0kb upstream 5995 true scaffold_2: 46148759-46154753 Setaria italica
Seita.2G397100 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 46152754-46154753 Setaria italica
Seita.2G397100 2.0kb downstream 2.0kb downstream 5995 true scaffold_2: 46146759-46152753 Setaria italica
Seita.2G397100 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 46146759-46148758 Setaria italica
Seita.2G397100 5.0kb upstream 5.0kb upstream 8995 true scaffold_2: 46148759-46157753 Setaria italica
Seita.2G397100 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 46152754-46157753 Setaria italica
Seita.2G397100 5.0kb downstream 5.0kb downstream 8995 true scaffold_2: 46143759-46152753 Setaria italica
Seita.2G397100 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 46143759-46148758 Setaria italica
Seita.2G397100 10.0kb upstream 10.0kb upstream 13995 true scaffold_2: 46148759-46162753 Setaria italica
Seita.2G397100 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 46152754-46162753 Setaria italica
Seita.2G397100 10.0kb downstream 10.0kb downstream 13995 true scaffold_2: 46138759-46152753 Setaria italica
Seita.2G397100 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 46138759-46148758 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199321 5267 Panicoideae View MSA
124589115 5269 Grass View MSA
122050139 5273 Angiosperm View MSA
121344528 5274 Embryophyte View MSA
123424051 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.184        
cufflinks 2.319       High
cufflinks 0.06     Low  
cufflinks 0.049     Low Low
cufflinks 0.062     Low  
cufflinks 3.036       High
cufflinks 0.319        
cufflinks 0.291        
cufflinks 0.145        
cufflinks 0.209     Low  
cufflinks 0.37        
cufflinks 0.116     Low  
cufflinks 0.228        
cufflinks 0.042     Low Low
cufflinks 0.183        
cufflinks 0.284        
cufflinks 0.071     Low  
cufflinks 0.076     Low  
cufflinks 0.028     Low Low
cufflinks 0.105     Low  

0 Strain