Gene : Seita.2G398600 S. italica v2.2
Defline:  (1 of 1) PTHR13363 - RING FINGER AND SRY DOMAIN-CONTAINING Genomic Order:  3986
Name:  ? Seita.2G398600 Secondary Identifier:  ? PAC:32723297
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G398600 0.5kb upstream 0.5kb upstream 8750 true scaffold_2: 46227957-46236706 Setaria italica
Seita.2G398600 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 46227957-46228456 Setaria italica
Seita.2G398600 0.5kb downstream 0.5kb downstream 8750 true scaffold_2: 46228457-46237206 Setaria italica
Seita.2G398600 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 46236707-46237206 Setaria italica
Seita.2G398600 1.0kb upstream 1.0kb upstream 9250 true scaffold_2: 46227457-46236706 Setaria italica
Seita.2G398600 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 46227457-46228456 Setaria italica
Seita.2G398600 1.0kb downstream 1.0kb downstream 9250 true scaffold_2: 46228457-46237706 Setaria italica
Seita.2G398600 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 46236707-46237706 Setaria italica
Seita.2G398600 2.0kb upstream 2.0kb upstream 10250 true scaffold_2: 46226457-46236706 Setaria italica
Seita.2G398600 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 46226457-46228456 Setaria italica
Seita.2G398600 2.0kb downstream 2.0kb downstream 10250 true scaffold_2: 46228457-46238706 Setaria italica
Seita.2G398600 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 46236707-46238706 Setaria italica
Seita.2G398600 5.0kb upstream 5.0kb upstream 13250 true scaffold_2: 46223457-46236706 Setaria italica
Seita.2G398600 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 46223457-46228456 Setaria italica
Seita.2G398600 5.0kb downstream 5.0kb downstream 13250 true scaffold_2: 46228457-46241706 Setaria italica
Seita.2G398600 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 46236707-46241706 Setaria italica
Seita.2G398600 10.0kb upstream 10.0kb upstream 18250 true scaffold_2: 46218457-46236706 Setaria italica
Seita.2G398600 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 46218457-46228456 Setaria italica
Seita.2G398600 10.0kb downstream 10.0kb downstream 18250 true scaffold_2: 46228457-46246706 Setaria italica
Seita.2G398600 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 46236707-46246706 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191302 5267 Panicoideae View MSA
124581986 5269 Grass View MSA
122044433 5273 Angiosperm View MSA
121350242 5274 Embryophyte View MSA
123426607 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.858     High  
cufflinks 13.115        
cufflinks 17.686     High High
cufflinks 12.712     High  
cufflinks 12.746     High  
cufflinks 14.082     High  
cufflinks 13.332     High  
cufflinks 9.68       Low
cufflinks 11.683        
cufflinks 6.339       Low
cufflinks 12.864        
cufflinks 12.741        
cufflinks 13.391        
cufflinks 21.678     High High
cufflinks 16.805     High  
cufflinks 15.898     High  
cufflinks 12.323        
cufflinks 13.943     High  
cufflinks 17.812     High High
cufflinks 13.146        

0 Strain