Gene : Seita.2G401200 S. italica v2.2
Defline:  (1 of 1) PTHR12281:SF10 - DCN1-LIKE PROTEIN 1 Genomic Order:  4012
Name:  ? Seita.2G401200 Secondary Identifier:  ? PAC:32723258
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G401200 0.5kb upstream 0.5kb upstream 4588 true scaffold_2: 46381058-46385645 Setaria italica
Seita.2G401200 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 46385146-46385645 Setaria italica
Seita.2G401200 0.5kb downstream 0.5kb downstream 4588 true scaffold_2: 46380558-46385145 Setaria italica
Seita.2G401200 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 46380558-46381057 Setaria italica
Seita.2G401200 1.0kb upstream 1.0kb upstream 5088 true scaffold_2: 46381058-46386145 Setaria italica
Seita.2G401200 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 46385146-46386145 Setaria italica
Seita.2G401200 1.0kb downstream 1.0kb downstream 5088 true scaffold_2: 46380058-46385145 Setaria italica
Seita.2G401200 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 46380058-46381057 Setaria italica
Seita.2G401200 2.0kb upstream 2.0kb upstream 6088 true scaffold_2: 46381058-46387145 Setaria italica
Seita.2G401200 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 46385146-46387145 Setaria italica
Seita.2G401200 2.0kb downstream 2.0kb downstream 6088 true scaffold_2: 46379058-46385145 Setaria italica
Seita.2G401200 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 46379058-46381057 Setaria italica
Seita.2G401200 5.0kb upstream 5.0kb upstream 9088 true scaffold_2: 46381058-46390145 Setaria italica
Seita.2G401200 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 46385146-46390145 Setaria italica
Seita.2G401200 5.0kb downstream 5.0kb downstream 9088 true scaffold_2: 46376058-46385145 Setaria italica
Seita.2G401200 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 46376058-46381057 Setaria italica
Seita.2G401200 10.0kb upstream 10.0kb upstream 14088 true scaffold_2: 46381058-46395145 Setaria italica
Seita.2G401200 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 46385146-46395145 Setaria italica
Seita.2G401200 10.0kb downstream 10.0kb downstream 14088 true scaffold_2: 46371058-46385145 Setaria italica
Seita.2G401200 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 46371058-46381057 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193045 5267 Panicoideae View MSA
124571705 5269 Grass View MSA
122049788 5273 Angiosperm View MSA
121347984 5274 Embryophyte View MSA
123426015 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.763        
cufflinks 7.175        
cufflinks 6.665        
cufflinks 6.485        
cufflinks 4.991       Low
cufflinks 6.311        
cufflinks 6.959        
cufflinks 6.769        
cufflinks 4.298       Low
cufflinks 6.615        
cufflinks 5.551        
cufflinks 8.2        
cufflinks 7.161        
cufflinks 5.91        
cufflinks 8.24        
cufflinks 9.849       High
cufflinks 10.386       High
cufflinks 9.473       High
cufflinks 5.364       Low
cufflinks 7.689        

0 Strain