Gene : Seita.2G408100 S. italica v2.2
Defline:  (1 of 3) 2.7.1.17 - Xylulokinase / Xylulose kinase Genomic Order:  4081
Name:  ? Seita.2G408100 Secondary Identifier:  ? PAC:32720979
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G408100 0.5kb upstream 0.5kb upstream 5618 true scaffold_2: 46777317-46782934 Setaria italica
Seita.2G408100 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 46782435-46782934 Setaria italica
Seita.2G408100 0.5kb downstream 0.5kb downstream 5618 true scaffold_2: 46776817-46782434 Setaria italica
Seita.2G408100 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 46776817-46777316 Setaria italica
Seita.2G408100 1.0kb upstream 1.0kb upstream 6118 true scaffold_2: 46777317-46783434 Setaria italica
Seita.2G408100 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 46782435-46783434 Setaria italica
Seita.2G408100 1.0kb downstream 1.0kb downstream 6118 true scaffold_2: 46776317-46782434 Setaria italica
Seita.2G408100 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 46776317-46777316 Setaria italica
Seita.2G408100 2.0kb upstream 2.0kb upstream 7118 true scaffold_2: 46777317-46784434 Setaria italica
Seita.2G408100 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 46782435-46784434 Setaria italica
Seita.2G408100 2.0kb downstream 2.0kb downstream 7118 true scaffold_2: 46775317-46782434 Setaria italica
Seita.2G408100 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 46775317-46777316 Setaria italica
Seita.2G408100 5.0kb upstream 5.0kb upstream 10118 true scaffold_2: 46777317-46787434 Setaria italica
Seita.2G408100 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 46782435-46787434 Setaria italica
Seita.2G408100 5.0kb downstream 5.0kb downstream 10118 true scaffold_2: 46772317-46782434 Setaria italica
Seita.2G408100 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 46772317-46777316 Setaria italica
Seita.2G408100 10.0kb upstream 10.0kb upstream 15118 true scaffold_2: 46777317-46792434 Setaria italica
Seita.2G408100 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 46782435-46792434 Setaria italica
Seita.2G408100 10.0kb downstream 10.0kb downstream 15118 true scaffold_2: 46767317-46782434 Setaria italica
Seita.2G408100 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 46767317-46777316 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188596 5267 Panicoideae View MSA
124588117 5269 Grass View MSA
122046160 5273 Angiosperm View MSA
121345500 5274 Embryophyte View MSA
123427238 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.484       High
cufflinks 10.516       High
cufflinks 5.63        
cufflinks 4.697       Low
cufflinks 3.667       Low
cufflinks 8.988        
cufflinks 6.742        
cufflinks 5.982        
cufflinks 6.484        
cufflinks 5.339        
cufflinks 8.152        
cufflinks 8.23        
cufflinks 9.449        
cufflinks 5.753        
cufflinks 10.693       High
cufflinks 4.494       Low
cufflinks 9.135        
cufflinks 4.064       Low
cufflinks 4.078       Low
cufflinks 9.651       High

0 Strain