Gene : Seita.2G411100 S. italica v2.2
Defline:  (1 of 1) PTHR21013 - ATP SYNTHASE MITOCHONDRIAL F1 COMPLEX ASSEMBLY FACTOR 2/ATP12 PROTEIN, MITOCHONDRIAL PRECURSOR Genomic Order:  4111
Name:  ? Seita.2G411100 Secondary Identifier:  ? PAC:32719477
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G411100 0.5kb upstream 0.5kb upstream 3112 true scaffold_2: 46948081-46951192 Setaria italica
Seita.2G411100 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 46950693-46951192 Setaria italica
Seita.2G411100 0.5kb downstream 0.5kb downstream 3112 true scaffold_2: 46947581-46950692 Setaria italica
Seita.2G411100 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 46947581-46948080 Setaria italica
Seita.2G411100 1.0kb upstream 1.0kb upstream 3612 true scaffold_2: 46948081-46951692 Setaria italica
Seita.2G411100 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 46950693-46951692 Setaria italica
Seita.2G411100 1.0kb downstream 1.0kb downstream 3612 true scaffold_2: 46947081-46950692 Setaria italica
Seita.2G411100 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 46947081-46948080 Setaria italica
Seita.2G411100 2.0kb upstream 2.0kb upstream 4612 true scaffold_2: 46948081-46952692 Setaria italica
Seita.2G411100 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 46950693-46952692 Setaria italica
Seita.2G411100 2.0kb downstream 2.0kb downstream 4612 true scaffold_2: 46946081-46950692 Setaria italica
Seita.2G411100 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 46946081-46948080 Setaria italica
Seita.2G411100 5.0kb upstream 5.0kb upstream 7612 true scaffold_2: 46948081-46955692 Setaria italica
Seita.2G411100 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 46950693-46955692 Setaria italica
Seita.2G411100 5.0kb downstream 5.0kb downstream 7612 true scaffold_2: 46943081-46950692 Setaria italica
Seita.2G411100 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 46943081-46948080 Setaria italica
Seita.2G411100 10.0kb upstream 10.0kb upstream 12612 true scaffold_2: 46948081-46960692 Setaria italica
Seita.2G411100 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 46950693-46960692 Setaria italica
Seita.2G411100 10.0kb downstream 10.0kb downstream 12612 true scaffold_2: 46938081-46950692 Setaria italica
Seita.2G411100 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 46938081-46948080 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197382 5267 Panicoideae View MSA
124579051 5269 Grass View MSA
122045593 5273 Angiosperm View MSA
121344547 5274 Embryophyte View MSA
123428622 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.199        
cufflinks 11.387        
cufflinks 4.1       Low
cufflinks 2.673       Low
cufflinks 3.993       Low
cufflinks 8.526        
cufflinks 7.612        
cufflinks 11.492        
cufflinks 9.248        
cufflinks 10.854        
cufflinks 9.811        
cufflinks 13.003        
cufflinks 8.983        
cufflinks 9.324        
cufflinks 10.955        
cufflinks 9.066        
cufflinks 14.482     High High
cufflinks 8.087        
cufflinks 4.433       Low
cufflinks 12.765        

0 Strain