Gene : Seita.2G409200 S. italica v2.2
Genomic Order:  4092 Name:  ? Seita.2G409200
Secondary Identifier:  ? PAC:32718828
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G409200 0.5kb upstream 0.5kb upstream 4400 true scaffold_2: 46839942-46844341 Setaria italica
Seita.2G409200 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 46843842-46844341 Setaria italica
Seita.2G409200 0.5kb downstream 0.5kb downstream 4400 true scaffold_2: 46839442-46843841 Setaria italica
Seita.2G409200 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 46839442-46839941 Setaria italica
Seita.2G409200 1.0kb upstream 1.0kb upstream 4900 true scaffold_2: 46839942-46844841 Setaria italica
Seita.2G409200 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 46843842-46844841 Setaria italica
Seita.2G409200 1.0kb downstream 1.0kb downstream 4900 true scaffold_2: 46838942-46843841 Setaria italica
Seita.2G409200 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 46838942-46839941 Setaria italica
Seita.2G409200 2.0kb upstream 2.0kb upstream 5900 true scaffold_2: 46839942-46845841 Setaria italica
Seita.2G409200 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 46843842-46845841 Setaria italica
Seita.2G409200 2.0kb downstream 2.0kb downstream 5900 true scaffold_2: 46837942-46843841 Setaria italica
Seita.2G409200 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 46837942-46839941 Setaria italica
Seita.2G409200 5.0kb upstream 5.0kb upstream 8900 true scaffold_2: 46839942-46848841 Setaria italica
Seita.2G409200 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 46843842-46848841 Setaria italica
Seita.2G409200 5.0kb downstream 5.0kb downstream 8900 true scaffold_2: 46834942-46843841 Setaria italica
Seita.2G409200 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 46834942-46839941 Setaria italica
Seita.2G409200 10.0kb upstream 10.0kb upstream 13900 true scaffold_2: 46839942-46853841 Setaria italica
Seita.2G409200 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 46843842-46853841 Setaria italica
Seita.2G409200 10.0kb downstream 10.0kb downstream 13900 true scaffold_2: 46829942-46843841 Setaria italica
Seita.2G409200 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 46829942-46839941 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182563 5267 Panicoideae View MSA
124578758 5269 Grass View MSA
122048396 5273 Angiosperm View MSA
121348590 5274 Embryophyte View MSA
123380928 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.978       Low
cufflinks 3.163        
cufflinks 2.613        
cufflinks 3.669        
cufflinks 2.481        
cufflinks 3.79        
cufflinks 2.599        
cufflinks 4.666       High
cufflinks 2.796        
cufflinks 4.313        
cufflinks 2.103       Low
cufflinks 3.746        
cufflinks 5.394       High
cufflinks 3.713        
cufflinks 3.336        
cufflinks 1.704       Low
cufflinks 4.78       High
cufflinks 2.13       Low
cufflinks 3.191        
cufflinks 4.067        

0 Strain